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The map label for this gene is yggW [H]

Identifier: 117919637

GI number: 117919637

Start: 1396824

End: 1397981

Strand: Reverse

Name: yggW [H]

Synonym: Shewana3_1188

Alternate gene names: 117919637

Gene position: 1397981-1396824 (Counterclockwise)

Preceding gene: 117919638

Following gene: 117919636

Centisome position: 28.12

GC content: 48.45

Gene sequence:

>1158_bases
ATGTCAGTGAATGTGTCACCTCAGTTAACCCTGCCGCCGTTGAGCCTGTACATCCATATCCCTTGGTGTGTACAAAAATG
CCCTTACTGCGACTTTAACTCCCATGGGCAAAACGGTGAATTACCCCAAAAGGCCTATGTGGATACGCTGCTAGCGGACT
TACGCCAAGACTTGCACTTAGTACAAGGCCGTAAGTTACACACCATTTTTATTGGTGGTGGAACGCCGTCTCTGTTTGAT
GCTAATCAAATCAAACGGATATTGGATGGCGCCAATGCGCTCATTCCCTTCAGTGACGATATTGAAATCACCATGGAGGC
CAACCCTGGCACCCTAGAGCACGATGACTTTAGTGCCTACCGCGCCGCAGGGGTCACCCGATTATCCATTGGGGTGCAGA
GTTTCTCTAAGGATAAGCTCAATCTGCTGGGGCGGATCCACGATCAAAACGAAGCCCAAACCGCCGCCCAAAAAGCCAGC
CAAGCGGGTTATTTAAGTTTTAACTTGGATTTGATGCACGGACTTCCGAATCAAAGTTTTGCTGAGGCCATGGCGGATAT
AGATACCGCTGCGGCGCTCAATCCGCCGCATTTGTCTTGGTACCAACTGACGATTGAGCCCAATACCCTGTTCCACTCAA
AACCGCCGCAGCTGCCCGACGATGAAGATCTCTGGCAGATCTACGAACAAGGGCAACAAAAGTTAGCGGCACTCGGTTAT
GAACAGTATGAAATCTCGGCCTATGCCAAACCCGGTTATCAATGCAGGCATAACCTTAACTATTGGCAGTTTGGTGATTA
CTTAGGCATTGGCTGTGGCGCCCATGGCAAAGTGACCTTGCCCGAAGAAAATCGCATTATTCGCACGGTAAAAATCAAAC
ACCCTAAGGGGTATTTAGCTGCCGACAACTATCACTTCGAGCAGACTGAGGTCGCCGAAGAAGATCGCGCCCTCGAATAC
TTGATGAATCGTCTGCGCTTAATGACACCTATCCCTAAGCAAGAGTTTGAAGACAGAACCGGTTTACACCGAGATTCTTT
GAAAGAGGGAATGGAAAAGGCCAAACAACGGGGTTTACTCACCGAATCTGCTGAACATTGGCAATTAACCAGTAAAGGTC
ACATGTTTGTGAACGATTTACTGACGCAATTTTGTTAA

Upstream 100 bases:

>100_bases
GTGACGAAAAAAATGCCTTGAGTCACCGTGGTAAAGCTTTAGTGCAACTGATTGCTGCCATGCAGGAAAAAGGCGTATTT
ACCGACGGGAACGCCCAATA

Downstream 100 bases:

>100_bases
TTCACCAATTAAATTTCCCATATAAATAATGTGTTAGCCTAGGTTTCTCGATGAGACATCTTTTATGGCTAACACATTTT
CTAACATTTATATTCATACA

Product: putative oxygen-independent coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MSVNVSPQLTLPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQKAYVDTLLADLRQDLHLVQGRKLHTIFIGGGTPSLFD
ANQIKRILDGANALIPFSDDIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQKAS
QAGYLSFNLDLMHGLPNQSFAEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEDLWQIYEQGQQKLAALGY
EQYEISAYAKPGYQCRHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTVKIKHPKGYLAADNYHFEQTEVAEEDRALEY
LMNRLRLMTPIPKQEFEDRTGLHRDSLKEGMEKAKQRGLLTESAEHWQLTSKGHMFVNDLLTQFC

Sequences:

>Translated_385_residues
MSVNVSPQLTLPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQKAYVDTLLADLRQDLHLVQGRKLHTIFIGGGTPSLFD
ANQIKRILDGANALIPFSDDIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQKAS
QAGYLSFNLDLMHGLPNQSFAEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEDLWQIYEQGQQKLAALGY
EQYEISAYAKPGYQCRHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTVKIKHPKGYLAADNYHFEQTEVAEEDRALEY
LMNRLRLMTPIPKQEFEDRTGLHRDSLKEGMEKAKQRGLLTESAEHWQLTSKGHMFVNDLLTQFC
>Mature_384_residues
SVNVSPQLTLPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQKAYVDTLLADLRQDLHLVQGRKLHTIFIGGGTPSLFDA
NQIKRILDGANALIPFSDDIEITMEANPGTLEHDDFSAYRAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQKASQ
AGYLSFNLDLMHGLPNQSFAEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEDLWQIYEQGQQKLAALGYE
QYEISAYAKPGYQCRHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTVKIKHPKGYLAADNYHFEQTEVAEEDRALEYL
MNRLRLMTPIPKQEFEDRTGLHRDSLKEGMEKAKQRGLLTESAEHWQLTSKGHMFVNDLLTQFC

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=297, Percent_Identity=32.996632996633, Blast_Score=168, Evalue=9e-42,
Organism=Escherichia coli, GI1789325, Length=376, Percent_Identity=59.5744680851064, Blast_Score=470, Evalue=1e-134,
Organism=Escherichia coli, GI87082341, Length=243, Percent_Identity=31.2757201646091, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 43497; Mature: 43365

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNVSPQLTLPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQKAYVDTLLADLRQDLHL
CCCCCCCCEECCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VQGRKLHTIFIGGGTPSLFDANQIKRILDGANALIPFSDDIEITMEANPGTLEHDDFSAY
HCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCCCCCHHH
RAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQKASQAGYLSFNLDLMHGLPNQSF
HHCCEEEEEECHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHH
AEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEDLWQIYEQGQQKLAALGY
HHHHHHHHHHHCCCCCCCEEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC
EQYEISAYAKPGYQCRHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTVKIKHPKGYLA
CCEEEEEECCCCHHHHCCCCCEECCCEEEECCCCCCEEECCCCCCEEEEEEEECCCCCEE
ADNYHFEQTEVAEEDRALEYLMNRLRLMTPIPKQEFEDRTGLHRDSLKEGMEKAKQRGLL
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCC
TESAEHWQLTSKGHMFVNDLLTQFC
CCCCCCEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SVNVSPQLTLPPLSLYIHIPWCVQKCPYCDFNSHGQNGELPQKAYVDTLLADLRQDLHL
CCCCCCCEECCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VQGRKLHTIFIGGGTPSLFDANQIKRILDGANALIPFSDDIEITMEANPGTLEHDDFSAY
HCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCCCCCHHH
RAAGVTRLSIGVQSFSKDKLNLLGRIHDQNEAQTAAQKASQAGYLSFNLDLMHGLPNQSF
HHCCEEEEEECHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHH
AEAMADIDTAAALNPPHLSWYQLTIEPNTLFHSKPPQLPDDEDLWQIYEQGQQKLAALGY
HHHHHHHHHHHCCCCCCCEEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCC
EQYEISAYAKPGYQCRHNLNYWQFGDYLGIGCGAHGKVTLPEENRIIRTVKIKHPKGYLA
CCEEEEEECCCCHHHHCCCCCEECCCEEEECCCCCCEEECCCCCCEEEEEEEECCCCCEE
ADNYHFEQTEVAEEDRALEYLMNRLRLMTPIPKQEFEDRTGLHRDSLKEGMEKAKQRGLL
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCC
TESAEHWQLTSKGHMFVNDLLTQFC
CCCCCCEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]