Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_008577 |
Length | 4,972,204 |
Click here to switch to the map view.
The map label for this gene is 117919636
Identifier: 117919636
GI number: 117919636
Start: 1394824
End: 1396671
Strand: Reverse
Name: 117919636
Synonym: Shewana3_1187
Alternate gene names: NA
Gene position: 1396671-1394824 (Counterclockwise)
Preceding gene: 117919637
Following gene: 117919630
Centisome position: 28.09
GC content: 48.16
Gene sequence:
>1848_bases ATGCCAATAAAAACGAACATCAGCTTAGTCGCATTTACCCTCTCCGCCCTGCTAGCACTGCCTTCCTATGCGGTGCCGAC CTTAAGTGACTCACATAATGTGGCCAGTGCAAGTGTTGCAGCCCAAAGCGAGTCAGAAAAAGCCAACGCCTTGTTTGAAG CCATCTTCATGGAAAACATCATGGCAAGCCCCATTGCGCAAACCTATATGGGCATTAAGCAGGACTATGATAAGTGGGAC GACATTGGCGATGAAGCGGATGCCCGTGAGTTGGCGCGTACCAAGAAACAGCTAACCGAAGTGAATCAACTGGATGCGAG TAAGCTTGATCCACAAACTCGCCTAAGCCTGACGTTACTCACTCAAAACCTGAATAACGATATCAAAGACTATCAGTGGC GTTACCATAACTACCCAGTAAATCAGATGCATGGTGGCCACTCGATGATCGCCTCCTTCCTGATTAATCAGCACCAGATC ACCGATGTCAGCGATGCTAAGGCCTATATCAGCCGCTTAAATGGCGTGCCCAAACGCCTAAGCCAACTGCAACAGGCGCT AGAAGTGCGCGCTGATAAAGGCATTATTGCCCCTAAATTTGTGTTTGGTTACGTGATATCTGACAGCCAAAACATCATTA AAGGCGCCCCCTTCGATAAAGGCGAAGACAGTGCCTTGTTAGCGGATTTTCGCAAAAAAGTGAGCGCACTCAGCATCACT GAAGCAGAAAAAGCCCAACTTATTGCCGATGCAGAAAAAGCACTGGTTTCGCAAGTTGAGCCTGCATACAAGACGCTTAT CGCCTATATCAAAACCTTAGAAGCCAAGGCCGATACCCGCGATGGGGTTTGGAAACTCCCCGACGGCGAGGCGTTTTATA ACAATGCCCTTGCGCGCACCACGACTACCCAAATGACGGCGGATGAAATCCATCAACTTGGTCTTGCCGAAGTGGAGCGC ATCCATAATGAAATGCGCGCCATCATGAAAAAGGTGAATTTTAACGGCACCTTGCAAGAGTTCTTCGCCTTTATGCGCGA TGATCCGCAGTTCTATTATCCAAATACCGCCGAAGGCAAAGCGGCATATTTAGCAGATGCAACCAAGCTTATCGATAATA TGCGCTCACGCTTGGATGAAGTCTTTAAGGTCAAGCCTAAGGCGGCCATGATAGTCAAACAGGTTGAAGCCTTTAGGGAA AAATCCGCGGGTAAAGCCTTCTATGAGCAACCTGCGCCCGATGGATCTCGCCCTGGTAGCTACTATGCCAACCTCTACGA TATGAAAGCCATGCCCAAATACCAGATGGAAGCACTGGCTTACCATGAGGGGATCCCAGGCCACCATATGCAAATCGCTA TCTCGCAGGAGCTAAAGGATATTCCTAAGTTCCGTAAGTTTGGTGGCTATACCGCTTATATCGAAGGTTGGGGGCTCTAC AGTGAGTCTTTCCCGAAGGAGATGGGCTTATATGCTGACCCTTACTCCGATTTTGGTCGACTGGCGATGGAGTTATGGCG AGCTTGTCGTTTAGTGGTCGATACAGGGATCCACGCCAAGAAATGGACCCGCGAACAAGGGATAGCTTATTACGTCGATA ATACCCCTAACGCAAAATCCGATGCGAAGAAAATGGTCGAACGTCATATCGTTATGCCATCGCAAGCTACTGCCTATAAA GTTGGGATGATTAAGTTACTCGAACTGAGACACAAGGCGGAAAAACAACTGGGTGATAAGTTTGATATCCGGGATTTCCA TACTTTAGTCTTGGCAAATGGCGCGCTGCCTTTAGATGTACTGGAAGAGCAAGTCGATCAATGGATTGCTAGTGTTAACA AAGCCTAA
Upstream 100 bases:
>100_bases GAGACATCTTTTATGGCTAACACATTTTCTAACATTTATATTCATACATTTTCCCCCTGCTTCTTTAGAATTACCTGAAC ATTGTTAAGGAAGCCTGATC
Downstream 100 bases:
>100_bases GCTTGAAACCGTGGGAGGCTAACGCTAGCCTCCCTTGAACGCCTTGCCAATAAAATCGTTAAATCGCAGCCAATAAAAAA GCCACTATTAAGTGGCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 615; Mature: 614
Protein sequence:
>615_residues MPIKTNISLVAFTLSALLALPSYAVPTLSDSHNVASASVAAQSESEKANALFEAIFMENIMASPIAQTYMGIKQDYDKWD DIGDEADARELARTKKQLTEVNQLDASKLDPQTRLSLTLLTQNLNNDIKDYQWRYHNYPVNQMHGGHSMIASFLINQHQI TDVSDAKAYISRLNGVPKRLSQLQQALEVRADKGIIAPKFVFGYVISDSQNIIKGAPFDKGEDSALLADFRKKVSALSIT EAEKAQLIADAEKALVSQVEPAYKTLIAYIKTLEAKADTRDGVWKLPDGEAFYNNALARTTTTQMTADEIHQLGLAEVER IHNEMRAIMKKVNFNGTLQEFFAFMRDDPQFYYPNTAEGKAAYLADATKLIDNMRSRLDEVFKVKPKAAMIVKQVEAFRE KSAGKAFYEQPAPDGSRPGSYYANLYDMKAMPKYQMEALAYHEGIPGHHMQIAISQELKDIPKFRKFGGYTAYIEGWGLY SESFPKEMGLYADPYSDFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYVDNTPNAKSDAKKMVERHIVMPSQATAYK VGMIKLLELRHKAEKQLGDKFDIRDFHTLVLANGALPLDVLEEQVDQWIASVNKA
Sequences:
>Translated_615_residues MPIKTNISLVAFTLSALLALPSYAVPTLSDSHNVASASVAAQSESEKANALFEAIFMENIMASPIAQTYMGIKQDYDKWD DIGDEADARELARTKKQLTEVNQLDASKLDPQTRLSLTLLTQNLNNDIKDYQWRYHNYPVNQMHGGHSMIASFLINQHQI TDVSDAKAYISRLNGVPKRLSQLQQALEVRADKGIIAPKFVFGYVISDSQNIIKGAPFDKGEDSALLADFRKKVSALSIT EAEKAQLIADAEKALVSQVEPAYKTLIAYIKTLEAKADTRDGVWKLPDGEAFYNNALARTTTTQMTADEIHQLGLAEVER IHNEMRAIMKKVNFNGTLQEFFAFMRDDPQFYYPNTAEGKAAYLADATKLIDNMRSRLDEVFKVKPKAAMIVKQVEAFRE KSAGKAFYEQPAPDGSRPGSYYANLYDMKAMPKYQMEALAYHEGIPGHHMQIAISQELKDIPKFRKFGGYTAYIEGWGLY SESFPKEMGLYADPYSDFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYVDNTPNAKSDAKKMVERHIVMPSQATAYK VGMIKLLELRHKAEKQLGDKFDIRDFHTLVLANGALPLDVLEEQVDQWIASVNKA >Mature_614_residues PIKTNISLVAFTLSALLALPSYAVPTLSDSHNVASASVAAQSESEKANALFEAIFMENIMASPIAQTYMGIKQDYDKWDD IGDEADARELARTKKQLTEVNQLDASKLDPQTRLSLTLLTQNLNNDIKDYQWRYHNYPVNQMHGGHSMIASFLINQHQIT DVSDAKAYISRLNGVPKRLSQLQQALEVRADKGIIAPKFVFGYVISDSQNIIKGAPFDKGEDSALLADFRKKVSALSITE AEKAQLIADAEKALVSQVEPAYKTLIAYIKTLEAKADTRDGVWKLPDGEAFYNNALARTTTTQMTADEIHQLGLAEVERI HNEMRAIMKKVNFNGTLQEFFAFMRDDPQFYYPNTAEGKAAYLADATKLIDNMRSRLDEVFKVKPKAAMIVKQVEAFREK SAGKAFYEQPAPDGSRPGSYYANLYDMKAMPKYQMEALAYHEGIPGHHMQIAISQELKDIPKFRKFGGYTAYIEGWGLYS ESFPKEMGLYADPYSDFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYVDNTPNAKSDAKKMVERHIVMPSQATAYKV GMIKLLELRHKAEKQLGDKFDIRDFHTLVLANGALPLDVLEEQVDQWIASVNKA
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69138; Mature: 69006
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIKTNISLVAFTLSALLALPSYAVPTLSDSHNVASASVAAQSESEKANALFEAIFMENI CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHH MASPIAQTYMGIKQDYDKWDDIGDEADARELARTKKQLTEVNQLDASKLDPQTRLSLTLL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHH TQNLNNDIKDYQWRYHNYPVNQMHGGHSMIASFLINQHQITDVSDAKAYISRLNGVPKRL HHHHCCCHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH SQLQQALEVRADKGIIAPKFVFGYVISDSQNIIKGAPFDKGEDSALLADFRKKVSALSIT HHHHHHHHHHHCCCCCCHHHHHHEEECCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCC EAEKAQLIADAEKALVSQVEPAYKTLIAYIKTLEAKADTRDGVWKLPDGEAFYNNALART HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHCCHHHH TTTQMTADEIHQLGLAEVERIHNEMRAIMKKVNFNGTLQEFFAFMRDDPQFYYPNTAEGK HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCC AAYLADATKLIDNMRSRLDEVFKVKPKAAMIVKQVEAFREKSAGKAFYEQPAPDGSRPGS HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC YYANLYDMKAMPKYQMEALAYHEGIPGHHMQIAISQELKDIPKFRKFGGYTAYIEGWGLY HHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEEECCCCC SESFPKEMGLYADPYSDFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYVDNTPNAKS HHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEECCCCCCHH DAKKMVERHIVMPSQATAYKVGMIKLLELRHKAEKQLGDKFDIRDFHTLVLANGALPLDV HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHH LEEQVDQWIASVNKA HHHHHHHHHHHHCCC >Mature Secondary Structure PIKTNISLVAFTLSALLALPSYAVPTLSDSHNVASASVAAQSESEKANALFEAIFMENI CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHH MASPIAQTYMGIKQDYDKWDDIGDEADARELARTKKQLTEVNQLDASKLDPQTRLSLTLL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHH TQNLNNDIKDYQWRYHNYPVNQMHGGHSMIASFLINQHQITDVSDAKAYISRLNGVPKRL HHHHCCCHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH SQLQQALEVRADKGIIAPKFVFGYVISDSQNIIKGAPFDKGEDSALLADFRKKVSALSIT HHHHHHHHHHHCCCCCCHHHHHHEEECCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCC EAEKAQLIADAEKALVSQVEPAYKTLIAYIKTLEAKADTRDGVWKLPDGEAFYNNALART HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHCCHHHH TTTQMTADEIHQLGLAEVERIHNEMRAIMKKVNFNGTLQEFFAFMRDDPQFYYPNTAEGK HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCC AAYLADATKLIDNMRSRLDEVFKVKPKAAMIVKQVEAFREKSAGKAFYEQPAPDGSRPGS HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC YYANLYDMKAMPKYQMEALAYHEGIPGHHMQIAISQELKDIPKFRKFGGYTAYIEGWGLY HHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEEECCCCC SESFPKEMGLYADPYSDFGRLAMELWRACRLVVDTGIHAKKWTREQGIAYYVDNTPNAKS HHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEECCCCCCHH DAKKMVERHIVMPSQATAYKVGMIKLLELRHKAEKQLGDKFDIRDFHTLVLANGALPLDV HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHH LEEQVDQWIASVNKA HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA