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The map label for this gene is lptE [H]

Identifier: 117919449

GI number: 117919449

Start: 1169896

End: 1170390

Strand: Reverse

Name: lptE [H]

Synonym: Shewana3_1000

Alternate gene names: 117919449

Gene position: 1170390-1169896 (Counterclockwise)

Preceding gene: 117919450

Following gene: 117919448

Centisome position: 23.54

GC content: 50.91

Gene sequence:

>495_bases
ATGCTAATTAAACGCTTAGCTTTCGCAATCATGGCGCTGGTCATTATGACCAGCGCAGGTTGCGGTTTTAAGCTTCAACG
TAGCTACCAAATCCCCGAGCAGCTCAATCAACTCAGTTTGAGCAGCTCGGACGAATACAGCGAACTCACCCGTTTGGTGC
GTGAGCGGTTACGTTTGAACAACGTCAAGATTGTCGATGCTGCCAATGATGTGCCAGTGTTAAGGCTCATCACCGACTCC
TTAGAGCGTTCTACCCTGTCACTTTACCCTACGGGCAATGTGGCTGAGTATGAGCTTATCTATTTCGTCGAATTTGCCGT
GGCCTTGCCGGGCAAAGAGGCGCAGCCTTTCAAGATTGAAATTCGCCGCGATTACTTAGACGACCCTCGCACCGCACTGG
CGAAAAGCCGTGAGATGGAACTGTTAGTCAAAGAAATGCGTATCCAGGCGGCCGACCGGATCCTGCAATCCATGGCCAGC
ACAGAGGTGAATTAA

Upstream 100 bases:

>100_bases
TCTATGTACCCGGTAAACTGCTCAGCATCGTTGCCAACTAACATCGTTGCTGTGATAAACGGATGCTGTCCACAAGACAA
ACAGGAAACCGCGAAAACTT

Downstream 100 bases:

>100_bases
TGCAGGGTCCAAATTAATGTGGAACTGCAATAAAATGTGGAGAGTGATTTAAATGCGTGTTTATCCTGATCAACTCTCCC
GCCATCTCAATCCGCTTCAC

Product: rare lipoprotein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MLIKRLAFAIMALVIMTSAGCGFKLQRSYQIPEQLNQLSLSSSDEYSELTRLVRERLRLNNVKIVDAANDVPVLRLITDS
LERSTLSLYPTGNVAEYELIYFVEFAVALPGKEAQPFKIEIRRDYLDDPRTALAKSREMELLVKEMRIQAADRILQSMAS
TEVN

Sequences:

>Translated_164_residues
MLIKRLAFAIMALVIMTSAGCGFKLQRSYQIPEQLNQLSLSSSDEYSELTRLVRERLRLNNVKIVDAANDVPVLRLITDS
LERSTLSLYPTGNVAEYELIYFVEFAVALPGKEAQPFKIEIRRDYLDDPRTALAKSREMELLVKEMRIQAADRILQSMAS
TEVN
>Mature_164_residues
MLIKRLAFAIMALVIMTSAGCGFKLQRSYQIPEQLNQLSLSSSDEYSELTRLVRERLRLNNVKIVDAANDVPVLRLITDS
LERSTLSLYPTGNVAEYELIYFVEFAVALPGKEAQPFKIEIRRDYLDDPRTALAKSREMELLVKEMRIQAADRILQSMAS
TEVN

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane [H]

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1786860, Length=161, Percent_Identity=35.4037267080745, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007485 [H]

Pfam domain/function: PF04390 RplB [H]

EC number: NA

Molecular weight: Translated: 18672; Mature: 18672

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKRLAFAIMALVIMTSAGCGFKLQRSYQIPEQLNQLSLSSSDEYSELTRLVRERLRLN
CHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
NVKIVDAANDVPVLRLITDSLERSTLSLYPTGNVAEYELIYFVEFAVALPGKEAQPFKIE
CEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
IRRDYLDDPRTALAKSREMELLVKEMRIQAADRILQSMASTEVN
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLIKRLAFAIMALVIMTSAGCGFKLQRSYQIPEQLNQLSLSSSDEYSELTRLVRERLRLN
CHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
NVKIVDAANDVPVLRLITDSLERSTLSLYPTGNVAEYELIYFVEFAVALPGKEAQPFKIE
CEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
IRRDYLDDPRTALAKSREMELLVKEMRIQAADRILQSMASTEVN
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA