Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_008577 |
Length | 4,972,204 |
Click here to switch to the map view.
The map label for this gene is leuS [H]
Identifier: 117919450
GI number: 117919450
Start: 1170450
End: 1173029
Strand: Reverse
Name: leuS [H]
Synonym: Shewana3_1001
Alternate gene names: 117919450
Gene position: 1173029-1170450 (Counterclockwise)
Preceding gene: 117919452
Following gene: 117919449
Centisome position: 23.59
GC content: 48.99
Gene sequence:
>2580_bases ATGCAAGAGCAATATAATCCCTCAGAAATTGAAGCCTTAGTGCAAAAGCACTGGCACGACAACAAAACCTTTGAAGTTAC TGAAGATGCGAACAAAGAAAAGTTTTATTGCCTTTCGATGTTCCCCTATCCTTCAGGTCGACTCCACATGGGACACGTTC GCAACTATACCATAGGCGATGTGGTTGCCCGCTTCCAGCGTCTTCAAGGCAAAAACGTGCTACAACCTATCGGTTGGGAC TCTTTCGGTTTGCCTGCAGAAAACGCCGCAATCAACAACAAAACAGCCCCAGCACCATGGACTTATCAAAATATTGAGTA CATGAAGAATCAGCTAAAACTGTTAGGTTTTGGCTATGACTGGAGCCGTGAAATCGCCACTTGTACCCCAGAATACTACC GCTGGGAACAATGGTTCTTCACTAAACTGTACGAAAAAGGCTTAGTTTACAAGAAGACAGCTTCTGTTAACTGGTGCCCT AACGATGAAACCGTACTGGCCAACGAGCAGGTACAAGACGGTTGCTGCTGGCGTTGTGATACCCCTGTAGAACAAAAAGA AATTCCACAGTGGTTCATTAAGATCACCGCCTACGCCGAAGAACTGTTAAACGATATCGACACCTTAGACGGCTGGCCTG AGCAAGTTAAGACCATGCAGCGCAACTGGATTGGTCGCAGTGAAGGCGTGGAAATGACCTTCGGTGTGGCAGGTAGCGAC AAGTCATTCGATATCTACACAACCCGTCCAGATACCCTGATGGGCGTAACCTATGTGGCTATTGCTGCGGGTCATCCATT AGCAGAATTAGCGGCTCAAACTAACCCAGAGCTGGCTCAATTTATTGAAGAGTGCAAAAACAGCACCACTTCAGAAGCCG ATTTGGCCACCATGGAAAAACGCGGTGTAGCAACAGGCCTTTACGCGATTCACCCCATCACTGGCAAACAAGTGCCTATT TGGGCGGCGAACTTTGTACTGATGAACTACGGCACCGGCGCCGTAATGTCAGTCCCTGGCCACGACCAACGCGATTACGA ATTTGCTAAAAAGTACAATCTGCCCATCGAAGCAGTTATCAAGCCTGTTGATGGCGAGTTAGACATCAGCGAAGCGGCTT ACACCGAAAAAGGCGTACTGTTTAACTCTGGTGAGTTCGACGGTTTAGACTTTGACGGCGCCTTCAATGCCATCGCCGAC AAGTTAGTGGCTGAAGGTAAAGGCAAACGCCAAGTCAACTATCGCCTACGCGACTGGGGTGTATCACGTCAACGTTACTG GGGCGCACCTATTCCTATGGTGACCTTAGCCGACGGCACTGTTATTCCAACGCCTGAAGATCAACTGCCAGTTATTCTGC CAGAAGATGTGGTGATGGATGGTATTCAAAGCCCAATCAAGGCCGACAAAGAATGGGCGAAAACCCAAGTTAACGGCCAA GATGCGCTGCGCGAAACCGATACCTTCGATACCTTTATGGAATCTTCTTGGTATTACGCCCGTTACTGCAGCCCACAAGC AGACCAAATGTTAGATCCGACTAAGGCTAACTACTGGTTACCAGTAGATCAGTATATTGGTGGTATCGAACACGCTTGTA TGCACTTGTTATACTTCCGCTTCTTCCACAAGTTGCTGCGTGATGCGGGTCTAGTGAACTCTAACGAGCCAGCGAAACAA CTGCTGACTCAGGGCATGGTTTTAGCCGATGCCTTCTACTACACCAACGACAAAGGTGCCCGTGTATGGGTGTCTCCGCT GGATGTAGTGACCACAGAAAAAGACGATAAAGGCCGAGTCACCAAAGCCATCGATAAAGACGGTAACGAACTGGTTTACA CCGGTATGTGCAAGATGTCTAAGTCGAAAAACAACGGTATCGACCCACAGGTGATGGTAGAGAAATACGGTGCCGACACA GTTCGTCTGTTTATGATGTTCGCATCACCACCAGAATTAACTCTGGAATGGCAAGAGTCTGGCGTTGAAGGCGCACACCG CTTTATCAAACGTCTGTGGAAACTGGCCAGCGATTATGTGGCTCAGGACAACAGCGAAGCCTTAGACGTTAGCAAATTAA CTAGCGAGCAAAAAGCGCTGCGCCGTGAAGTACACAAGACCATCGCTAAGGTGACCGATGATATCGGCCGTCGCCAGATG TTCAACACTGCGGTTGCCGCCGTGATGGAACTGATGAACCACCTGCAAAAAGCGCCACAAACCACAGGTCAAGACCGAGC CATTATCGGTGAAGCTTTAACTGCGGTAGTGCGTTTACTGTACCCAATCATCCCACACGTGAGCTTTACCCTGTGGAACG AACTGGGCAACACCAACAGCATCGAAGACAGCCAATGGCCTGTTGTCGATGAATCTGCTCTGGTAGAAGACAGCAAACTC ATCGTGGTACAAGTGAACGGTAAAGTGCGCGCTAAGATCACTGTCGCTGCCGATGCTGACCAAGCGTCAGTGGAAGCGCT GGGTATGGCGGACGAGCAAGTCATCAAGTACTTAGATGGTGTTACGGTTCGTAAAGTTATCTATGTACCCGGTAAACTGC TCAGCATCGTTGCCAACTAA
Upstream 100 bases:
>100_bases CCTTTTTAATGCATCGCTTCTAGTTTATTCTATGCAGATCTTATTCGCGTCGATATGGCGTTAGATCAAATAAATAGGCG GCACTGCCGGAAATAGCGTG
Downstream 100 bases:
>100_bases CATCGTTGCTGTGATAAACGGATGCTGTCCACAAGACAAACAGGAAACCGCGAAAACTTATGCTAATTAAACGCTTAGCT TTCGCAATCATGGCGCTGGT
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS [H]
Number of amino acids: Translated: 859; Mature: 859
Protein sequence:
>859_residues MQEQYNPSEIEALVQKHWHDNKTFEVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVARFQRLQGKNVLQPIGWD SFGLPAENAAINNKTAPAPWTYQNIEYMKNQLKLLGFGYDWSREIATCTPEYYRWEQWFFTKLYEKGLVYKKTASVNWCP NDETVLANEQVQDGCCWRCDTPVEQKEIPQWFIKITAYAEELLNDIDTLDGWPEQVKTMQRNWIGRSEGVEMTFGVAGSD KSFDIYTTRPDTLMGVTYVAIAAGHPLAELAAQTNPELAQFIEECKNSTTSEADLATMEKRGVATGLYAIHPITGKQVPI WAANFVLMNYGTGAVMSVPGHDQRDYEFAKKYNLPIEAVIKPVDGELDISEAAYTEKGVLFNSGEFDGLDFDGAFNAIAD KLVAEGKGKRQVNYRLRDWGVSRQRYWGAPIPMVTLADGTVIPTPEDQLPVILPEDVVMDGIQSPIKADKEWAKTQVNGQ DALRETDTFDTFMESSWYYARYCSPQADQMLDPTKANYWLPVDQYIGGIEHACMHLLYFRFFHKLLRDAGLVNSNEPAKQ LLTQGMVLADAFYYTNDKGARVWVSPLDVVTTEKDDKGRVTKAIDKDGNELVYTGMCKMSKSKNNGIDPQVMVEKYGADT VRLFMMFASPPELTLEWQESGVEGAHRFIKRLWKLASDYVAQDNSEALDVSKLTSEQKALRREVHKTIAKVTDDIGRRQM FNTAVAAVMELMNHLQKAPQTTGQDRAIIGEALTAVVRLLYPIIPHVSFTLWNELGNTNSIEDSQWPVVDESALVEDSKL IVVQVNGKVRAKITVAADADQASVEALGMADEQVIKYLDGVTVRKVIYVPGKLLSIVAN
Sequences:
>Translated_859_residues MQEQYNPSEIEALVQKHWHDNKTFEVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVARFQRLQGKNVLQPIGWD SFGLPAENAAINNKTAPAPWTYQNIEYMKNQLKLLGFGYDWSREIATCTPEYYRWEQWFFTKLYEKGLVYKKTASVNWCP NDETVLANEQVQDGCCWRCDTPVEQKEIPQWFIKITAYAEELLNDIDTLDGWPEQVKTMQRNWIGRSEGVEMTFGVAGSD KSFDIYTTRPDTLMGVTYVAIAAGHPLAELAAQTNPELAQFIEECKNSTTSEADLATMEKRGVATGLYAIHPITGKQVPI WAANFVLMNYGTGAVMSVPGHDQRDYEFAKKYNLPIEAVIKPVDGELDISEAAYTEKGVLFNSGEFDGLDFDGAFNAIAD KLVAEGKGKRQVNYRLRDWGVSRQRYWGAPIPMVTLADGTVIPTPEDQLPVILPEDVVMDGIQSPIKADKEWAKTQVNGQ DALRETDTFDTFMESSWYYARYCSPQADQMLDPTKANYWLPVDQYIGGIEHACMHLLYFRFFHKLLRDAGLVNSNEPAKQ LLTQGMVLADAFYYTNDKGARVWVSPLDVVTTEKDDKGRVTKAIDKDGNELVYTGMCKMSKSKNNGIDPQVMVEKYGADT VRLFMMFASPPELTLEWQESGVEGAHRFIKRLWKLASDYVAQDNSEALDVSKLTSEQKALRREVHKTIAKVTDDIGRRQM FNTAVAAVMELMNHLQKAPQTTGQDRAIIGEALTAVVRLLYPIIPHVSFTLWNELGNTNSIEDSQWPVVDESALVEDSKL IVVQVNGKVRAKITVAADADQASVEALGMADEQVIKYLDGVTVRKVIYVPGKLLSIVAN >Mature_859_residues MQEQYNPSEIEALVQKHWHDNKTFEVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVARFQRLQGKNVLQPIGWD SFGLPAENAAINNKTAPAPWTYQNIEYMKNQLKLLGFGYDWSREIATCTPEYYRWEQWFFTKLYEKGLVYKKTASVNWCP NDETVLANEQVQDGCCWRCDTPVEQKEIPQWFIKITAYAEELLNDIDTLDGWPEQVKTMQRNWIGRSEGVEMTFGVAGSD KSFDIYTTRPDTLMGVTYVAIAAGHPLAELAAQTNPELAQFIEECKNSTTSEADLATMEKRGVATGLYAIHPITGKQVPI WAANFVLMNYGTGAVMSVPGHDQRDYEFAKKYNLPIEAVIKPVDGELDISEAAYTEKGVLFNSGEFDGLDFDGAFNAIAD KLVAEGKGKRQVNYRLRDWGVSRQRYWGAPIPMVTLADGTVIPTPEDQLPVILPEDVVMDGIQSPIKADKEWAKTQVNGQ DALRETDTFDTFMESSWYYARYCSPQADQMLDPTKANYWLPVDQYIGGIEHACMHLLYFRFFHKLLRDAGLVNSNEPAKQ LLTQGMVLADAFYYTNDKGARVWVSPLDVVTTEKDDKGRVTKAIDKDGNELVYTGMCKMSKSKNNGIDPQVMVEKYGADT VRLFMMFASPPELTLEWQESGVEGAHRFIKRLWKLASDYVAQDNSEALDVSKLTSEQKALRREVHKTIAKVTDDIGRRQM FNTAVAAVMELMNHLQKAPQTTGQDRAIIGEALTAVVRLLYPIIPHVSFTLWNELGNTNSIEDSQWPVVDESALVEDSKL IVVQVNGKVRAKITVAADADQASVEALGMADEQVIKYLDGVTVRKVIYVPGKLLSIVAN
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI7661872, Length=875, Percent_Identity=35.5428571428571, Blast_Score=502, Evalue=1e-142, Organism=Escherichia coli, GI1786861, Length=859, Percent_Identity=74.2724097788126, Blast_Score=1354, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=400, Percent_Identity=26, Blast_Score=122, Evalue=1e-28, Organism=Caenorhabditis elegans, GI71997510, Length=808, Percent_Identity=30.9405940594059, Blast_Score=378, Evalue=1e-105, Organism=Caenorhabditis elegans, GI71997517, Length=803, Percent_Identity=30.8841843088418, Blast_Score=377, Evalue=1e-104, Organism=Caenorhabditis elegans, GI212645227, Length=380, Percent_Identity=28.1578947368421, Blast_Score=146, Evalue=4e-35, Organism=Caenorhabditis elegans, GI17554638, Length=83, Percent_Identity=42.1686746987952, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71980946, Length=154, Percent_Identity=29.8701298701299, Blast_Score=67, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323414, Length=814, Percent_Identity=36.977886977887, Blast_Score=506, Evalue=1e-144, Organism=Saccharomyces cerevisiae, GI6321531, Length=375, Percent_Identity=27.7333333333333, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6325217, Length=378, Percent_Identity=23.015873015873, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21355409, Length=880, Percent_Identity=33.2954545454545, Blast_Score=441, Evalue=1e-124, Organism=Drosophila melanogaster, GI17864482, Length=429, Percent_Identity=23.7762237762238, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI24653289, Length=429, Percent_Identity=23.7762237762238, Blast_Score=105, Evalue=1e-22, Organism=Drosophila melanogaster, GI281366294, Length=365, Percent_Identity=23.013698630137, Blast_Score=77, Evalue=6e-14,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 [H]
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1 [H]
EC number: =6.1.1.4 [H]
Molecular weight: Translated: 96791; Mature: 96791
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEQYNPSEIEALVQKHWHDNKTFEVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGD CCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCHHH VVARFQRLQGKNVLQPIGWDSFGLPAENAAINNKTAPAPWTYQNIEYMKNQLKLLGFGYD HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCC WSREIATCTPEYYRWEQWFFTKLYEKGLVYKKTASVNWCPNDETVLANEQVQDGCCWRCD CCCCHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCEEEECCCCCCCCCCCCC TPVEQKEIPQWFIKITAYAEELLNDIDTLDGWPEQVKTMQRNWIGRSEGVEMTFGVAGSD CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC KSFDIYTTRPDTLMGVTYVAIAAGHPLAELAAQTNPELAQFIEECKNSTTSEADLATMEK CCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH RGVATGLYAIHPITGKQVPIWAANFVLMNYGTGAVMSVPGHDQRDYEFAKKYNLPIEAVI CCCEECEEEEECCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCHHHHHHCCCCHHHEE KPVDGELDISEAAYTEKGVLFNSGEFDGLDFDGAFNAIADKLVAEGKGKRQVNYRLRDWG ECCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHCC VSRQRYWGAPIPMVTLADGTVIPTPEDQLPVILPEDVVMDGIQSPIKADKEWAKTQVNGQ CCCHHCCCCCCCEEEECCCEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCH DALRETDTFDTFMESSWYYARYCSPQADQMLDPTKANYWLPVDQYIGGIEHACMHLLYFR HHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCEEEEHHHHHCHHHHHHHHHHHHH FFHKLLRDAGLVNSNEPAKQLLTQGMVLADAFYYTNDKGARVWVSPLDVVTTEKDDKGRV HHHHHHHHCCCCCCCCHHHHHHHCCHHHHHEEEEECCCCCEEEECCCEEEECCCCCCCCH TKAIDKDGNELVYTGMCKMSKSKNNGIDPQVMVEKYGADTVRLFMMFASPPELTLEWQES HHHHCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCEEEEEHHC GVEGAHRFIKRLWKLASDYVAQDNSEALDVSKLTSEQKALRREVHKTIAKVTDDIGRRQM CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNTAVAAVMELMNHLQKAPQTTGQDRAIIGEALTAVVRLLYPIIPHVSFTLWNELGNTNS HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC IEDSQWPVVDESALVEDSKLIVVQVNGKVRAKITVAADADQASVEALGMADEQVIKYLDG CCCCCCCCCCCHHHCCCCCEEEEEECCEEEEEEEEEECCCCHHHHHHCCCHHHHHHHHCC VTVRKVIYVPGKLLSIVAN CEEEEEEECCCHHHHHHCC >Mature Secondary Structure MQEQYNPSEIEALVQKHWHDNKTFEVTEDANKEKFYCLSMFPYPSGRLHMGHVRNYTIGD CCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEEECCCCCCCEEECCCCCCCHHH VVARFQRLQGKNVLQPIGWDSFGLPAENAAINNKTAPAPWTYQNIEYMKNQLKLLGFGYD HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCC WSREIATCTPEYYRWEQWFFTKLYEKGLVYKKTASVNWCPNDETVLANEQVQDGCCWRCD CCCCHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCEEEECCCCCCCCCCCCC TPVEQKEIPQWFIKITAYAEELLNDIDTLDGWPEQVKTMQRNWIGRSEGVEMTFGVAGSD CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC KSFDIYTTRPDTLMGVTYVAIAAGHPLAELAAQTNPELAQFIEECKNSTTSEADLATMEK CCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH RGVATGLYAIHPITGKQVPIWAANFVLMNYGTGAVMSVPGHDQRDYEFAKKYNLPIEAVI CCCEECEEEEECCCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCHHHHHHCCCCHHHEE KPVDGELDISEAAYTEKGVLFNSGEFDGLDFDGAFNAIADKLVAEGKGKRQVNYRLRDWG ECCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHCC VSRQRYWGAPIPMVTLADGTVIPTPEDQLPVILPEDVVMDGIQSPIKADKEWAKTQVNGQ CCCHHCCCCCCCEEEECCCEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCH DALRETDTFDTFMESSWYYARYCSPQADQMLDPTKANYWLPVDQYIGGIEHACMHLLYFR HHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCEEEEHHHHHCHHHHHHHHHHHHH FFHKLLRDAGLVNSNEPAKQLLTQGMVLADAFYYTNDKGARVWVSPLDVVTTEKDDKGRV HHHHHHHHCCCCCCCCHHHHHHHCCHHHHHEEEEECCCCCEEEECCCEEEECCCCCCCCH TKAIDKDGNELVYTGMCKMSKSKNNGIDPQVMVEKYGADTVRLFMMFASPPELTLEWQES HHHHCCCCCEEEEEEEEHHCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCEEEEEHHC GVEGAHRFIKRLWKLASDYVAQDNSEALDVSKLTSEQKALRREVHKTIAKVTDDIGRRQM CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNTAVAAVMELMNHLQKAPQTTGQDRAIIGEALTAVVRLLYPIIPHVSFTLWNELGNTNS HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC IEDSQWPVVDESALVEDSKLIVVQVNGKVRAKITVAADADQASVEALGMADEQVIKYLDG CCCCCCCCCCCHHHCCCCCEEEEEECCEEEEEEEEEECCCCHHHHHHCCCHHHHHHHHCC VTVRKVIYVPGKLLSIVAN CEEEEEEECCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA