Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
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Accession | NC_008577 |
Length | 4,972,204 |
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The map label for this gene is fhuE [H]
Identifier: 117919401
GI number: 117919401
Start: 1115429
End: 1117618
Strand: Direct
Name: fhuE [H]
Synonym: Shewana3_0952
Alternate gene names: 117919401
Gene position: 1115429-1117618 (Clockwise)
Preceding gene: 117919400
Following gene: 117919402
Centisome position: 22.43
GC content: 45.89
Gene sequence:
>2190_bases ATGCGTTTTAATCTACTTCCTCTTGCGGCTGCGGTAACACTAGCATTGAATCCTTTGGCGTTGATGGCCGAAGAACAAAC CTCTTCTAAAACAGAGACACAAGATCAAAATATCGAAAAAATCACCGTGATGGGTAAATACACTGTGAGTCGAAATATTG ATACAGCGACAGGTCTCGGACTCACATTACGGGAAACGCCACAGTCGGTCAGCATCATGACGGCGGATCGGATTGAAGAT CAGGCGTTAAATACTGTGGTCGACGTGGTGAATAACACTGTGGGCCTGTCTTCTTCAAAAACCGATAACGTGCGTAACGG TTTTTCGGCCCGCGGTTTTACCGTACAAAACTATCAAATTGATGGCGTGCCTTTATCTTGGAGTTTAGGCGGCGATGCTG GCGAAACGGTATCGGATGTGTCTATCTACGAGCGTGTTGAAGTTGTGCGTGGTGCTACCGGTTTATTAACGGGTGCAGGC GATCCTTCTGCCTCGATTAACTTAGTGCGTAAGCATGCCGACAGCTCAGATCTTAAAGGTTATGTGGATGTCGCAACGGG AAGTTGGGATAAAAAACAAGTCACTGCGGATGTGTCCAATGGTTTGAATGAAGACGGCAGTGTCCGTGGCCGTTTAGTCG CTAAGTATGTGAATAGCGATTCTTACCAAAATCTGTATCAAGACCGTAAAACCATTCTCTATGGTGTGGTTGATAGCGAT ATCACCGCCAACACTTTACTGCGTGTCGGTGCTAGCTATAACCACAACGATCCAAAAGGCGCGATGTGGGGCGCGTTGCC CGCCGTCTTTAGCGATGGCTCAGCCACAGATTGGGATACTTCGGCCACCACAGCCGCCGATTGGAGCCGCTGGGAAACCA AGAATATCAACTACTTTGCTAACCTAAATCATTACTTCAGCAATGGTTGGCAACTGGTGGCTAACTACAACCGCATGGAA TATGAAACCACAACTAAGATGATCTACATGTCGGGTTTACTCGATAAAGACACGGGTGCTGGGCTCAGTGGTCAGCGTTA TCACAGCCATGGTGAAAGTAACTCGAATAACTTTGATGTGCAGCTTAAGGGCGACTATGACCTCTTTGGTCAAACCCATG AGTTTGTGACGGGCGCCTTATATAGTAAGCAAAAATCCTACGCCGATACTTATGAGCCTATCCGTGACGATATGACGGGT TGGGACTCACAAGTGGTCGATAACTTCTACGAATGGCAACAAAATCAGTTTGCTGAGCCTGAATGGTCGACCAATGCGAA CCGTCAGCTCAATATGGATACCGAGCAAAAAGGCTTTTATGCGGCGACTCGCCTGACCATCACCGATGATTTCAAACTGA TTGCCGGTGGGCGTATCTCAAGCTGGAACCGTGAAGGCGTGAGCTATGGTACCGATACTAACTTTGGCGATGATGGTGTG TTTGTGCCCTATGTTGGTGCCTTATACGATATCAATGAAGAGCACCGTATTTACGCCAGCTATACCGGGATTTTTAATCC GCAGAATAAACAGGATGCGAGTGGCGATTATCTTGACCCATTAGAGGGGAAAGCATATGAGATTGGTTTAAAAAGTGCGT ATTTAGATGACCGTCTGCATACATCGCTAGCATTGTTTAAAATCGAGCAGGATAACTTTGGTAAACAAGATCCGGACTTT GTACCGACTGAAGAGCAAATCGCCAACGGCCAAACGACCGCATACTATGCTATCCAAGGTACGGAAAGTAAGGGCTTCGA GTTAGAAGTTGTTGGGGAGTTTATCGACGGTTGGAATATTTCAGCAGGCTATTCACAATTTAAAGCCGAAGATGCTGAAG GAAATAAGCTGGATACAACCAGTCCACGTAAGCAATTTAAACTCTTTACTACCTATCAATTTGTGGATTTATTACCAGAG TTAACCATTGGTGGTGGAGTGAATTGGCAAAGCGACAGTTATTCTACAGGTGGCAATGTCACTATCACGCAGGATGCCTA TTCTTTGGTGAATCTGATGGCGCGCTACGATCTGGCTGAAAATATGGATCTGCAGGTTAACGTAGAGAATTTACTGGATG AGAAATATTACGCCTATATGTCAACCTCTAGTTATTTGCCAGAAGCTTATAGCGTATATCACTACGGTGCGCCACGTAAC TTTACCGTTAGCTTTAACTATCGCTTCTAA
Upstream 100 bases:
>100_bases AGAATGACAAATTTGTTATATTTATCACATAAAATACAAATGCAAATCGTTCTCAATGGTGTTACCGTATGCGCACCTTA ACAAAACTTGCTGAACGACT
Downstream 100 bases:
>100_bases GCATTTTCCCCGTTGAACTCAAAAAGCCGGTGCACTTAAGGGCACCGGCTTTTTGCTATCGACTTCACTACGATTTTTGG CGTAGATGCGACCGAGTATG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Outer-membrane receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid [H]
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MRFNLLPLAAAVTLALNPLALMAEEQTSSKTETQDQNIEKITVMGKYTVSRNIDTATGLGLTLRETPQSVSIMTADRIED QALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNYQIDGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTGAG DPSASINLVRKHADSSDLKGYVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQNLYQDRKTILYGVVDSD ITANTLLRVGASYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINYFANLNHYFSNGWQLVANYNRME YETTTKMIYMSGLLDKDTGAGLSGQRYHSHGESNSNNFDVQLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDMTG WDSQVVDNFYEWQQNQFAEPEWSTNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDDGV FVPYVGALYDINEEHRIYASYTGIFNPQNKQDASGDYLDPLEGKAYEIGLKSAYLDDRLHTSLALFKIEQDNFGKQDPDF VPTEEQIANGQTTAYYAIQGTESKGFELEVVGEFIDGWNISAGYSQFKAEDAEGNKLDTTSPRKQFKLFTTYQFVDLLPE LTIGGGVNWQSDSYSTGGNVTITQDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMSTSSYLPEAYSVYHYGAPRN FTVSFNYRF
Sequences:
>Translated_729_residues MRFNLLPLAAAVTLALNPLALMAEEQTSSKTETQDQNIEKITVMGKYTVSRNIDTATGLGLTLRETPQSVSIMTADRIED QALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNYQIDGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTGAG DPSASINLVRKHADSSDLKGYVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQNLYQDRKTILYGVVDSD ITANTLLRVGASYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINYFANLNHYFSNGWQLVANYNRME YETTTKMIYMSGLLDKDTGAGLSGQRYHSHGESNSNNFDVQLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDMTG WDSQVVDNFYEWQQNQFAEPEWSTNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDDGV FVPYVGALYDINEEHRIYASYTGIFNPQNKQDASGDYLDPLEGKAYEIGLKSAYLDDRLHTSLALFKIEQDNFGKQDPDF VPTEEQIANGQTTAYYAIQGTESKGFELEVVGEFIDGWNISAGYSQFKAEDAEGNKLDTTSPRKQFKLFTTYQFVDLLPE LTIGGGVNWQSDSYSTGGNVTITQDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMSTSSYLPEAYSVYHYGAPRN FTVSFNYRF >Mature_729_residues MRFNLLPLAAAVTLALNPLALMAEEQTSSKTETQDQNIEKITVMGKYTVSRNIDTATGLGLTLRETPQSVSIMTADRIED QALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNYQIDGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTGAG DPSASINLVRKHADSSDLKGYVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQNLYQDRKTILYGVVDSD ITANTLLRVGASYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINYFANLNHYFSNGWQLVANYNRME YETTTKMIYMSGLLDKDTGAGLSGQRYHSHGESNSNNFDVQLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDMTG WDSQVVDNFYEWQQNQFAEPEWSTNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDDGV FVPYVGALYDINEEHRIYASYTGIFNPQNKQDASGDYLDPLEGKAYEIGLKSAYLDDRLHTSLALFKIEQDNFGKQDPDF VPTEEQIANGQTTAYYAIQGTESKGFELEVVGEFIDGWNISAGYSQFKAEDAEGNKLDTTSPRKQFKLFTTYQFVDLLPE LTIGGGVNWQSDSYSTGGNVTITQDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMSTSSYLPEAYSVYHYGAPRN FTVSFNYRF
Specific function: Required for the uptake of Fe(3+) via coprogen, ferrioxamine B, and rhodotorulic acid [H]
COG id: COG4773
COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=741, Percent_Identity=37.9217273954116, Blast_Score=472, Evalue=1e-134, Organism=Escherichia coli, GI1786344, Length=789, Percent_Identity=24.0811153358682, Blast_Score=110, Evalue=4e-25, Organism=Escherichia coli, GI1787024, Length=350, Percent_Identity=27.1428571428571, Blast_Score=86, Evalue=8e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 81089; Mature: 81089
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFNLLPLAAAVTLALNPLALMAEEQTSSKTETQDQNIEKITVMGKYTVSRNIDTATGLG CCCCCHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCC LTLRETPQSVSIMTADRIEDQALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNYQI EEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEEEEE DGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTGAGDPSASINLVRKHADSSDLKG CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEHEEECCCCCCCCE YVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQNLYQDRKTILYGVVDSD EEEEECCCCCCCEEEEHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCEEEEEEECCC ITANTLLRVGASYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINYFA CCHHHHHEECCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE NLNHYFSNGWQLVANYNRMEYETTTKMIYMSGLLDKDTGAGLSGQRYHSHGESNSNNFDV CCCHHHCCCEEEEECCCCEEEEHHHEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCEEEE QLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDMTGWDSQVVDNFYEWQQNQFAEP EEECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC EWSTNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDDGV CCCCCCCCEECCCCCCCCEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCE FVPYVGALYDINEEHRIYASYTGIFNPQNKQDASGDYLDPLEGKAYEIGLKSAYLDDRLH ECCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH TSLALFKIEQDNFGKQDPDFVPTEEQIANGQTTAYYAIQGTESKGFELEVVGEFIDGWNI CEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEHHHCCCCC SAGYSQFKAEDAEGNKLDTTSPRKQFKLFTTYQFVDLLPELTIGGGVNWQSDSYSTGGNV CCCHHHHCCCCCCCCCCCCCCCHHHEEEEEHHHHHHHCCCCEECCCCCCCCCCCCCCCCE TITQDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMSTSSYLPEAYSVYHYGAPRN EEEHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCHHEEEEECCCCCCCCCEEEEECCCCE FTVSFNYRF EEEEEEECC >Mature Secondary Structure MRFNLLPLAAAVTLALNPLALMAEEQTSSKTETQDQNIEKITVMGKYTVSRNIDTATGLG CCCCCHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCC LTLRETPQSVSIMTADRIEDQALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNYQI EEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEEEEE DGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTGAGDPSASINLVRKHADSSDLKG CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEHEEECCCCCCCCE YVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQNLYQDRKTILYGVVDSD EEEEECCCCCCCEEEEHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHCCCEEEEEEECCC ITANTLLRVGASYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINYFA CCHHHHHEECCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE NLNHYFSNGWQLVANYNRMEYETTTKMIYMSGLLDKDTGAGLSGQRYHSHGESNSNNFDV CCCHHHCCCEEEEECCCCEEEEHHHEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCEEEE QLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDMTGWDSQVVDNFYEWQQNQFAEP EEECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC EWSTNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDDGV CCCCCCCCEECCCCCCCCEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCE FVPYVGALYDINEEHRIYASYTGIFNPQNKQDASGDYLDPLEGKAYEIGLKSAYLDDRLH ECCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH TSLALFKIEQDNFGKQDPDFVPTEEQIANGQTTAYYAIQGTESKGFELEVVGEFIDGWNI CEEEEEEEECCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEHHHCCCCC SAGYSQFKAEDAEGNKLDTTSPRKQFKLFTTYQFVDLLPELTIGGGVNWQSDSYSTGGNV CCCHHHHCCCCCCCCCCCCCCCHHHEEEEEHHHHHHHCCCCEECCCCCCCCCCCCCCCCE TITQDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMSTSSYLPEAYSVYHYGAPRN EEEHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCHHEEEEECCCCCCCCCEEEEECCCCE FTVSFNYRF EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2162465; 8905232; 9278503; 3032906 [H]