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The map label for this gene is yciR [C]

Identifier: 117919346

GI number: 117919346

Start: 1041198

End: 1042646

Strand: Direct

Name: yciR [C]

Synonym: Shewana3_0894

Alternate gene names: 117919346

Gene position: 1041198-1042646 (Clockwise)

Preceding gene: 117919344

Following gene: 117919354

Centisome position: 20.94

GC content: 48.86

Gene sequence:

>1449_bases
TTGCCTCAGTATGATGATGTAAATGAGCCGCAGGCATGGTTGGAGAGTTGTGTGAAAAACGATGGTTATACTTCCCTAAG
CCAATTTGTTGATCTGCTATTGGATGCCATCTGTGTCGTCGATAAAACGGGGCACTTTGAGTTTGTTAGTGCGGGGGCCG
AACGTATTTTTGGCTATACCCCGGACGAAATGCTCGGCATGCAGATGTTAGATCTTGTCTATCCACCGGACAGGGAACGG
ACTCTCGCCGCAGCCAATGACATCATGGAAGGGCGTTTTAAGCTCGACTTTGAAAACCGTTATGTACGAAAGGACGGTAC
TCTTGTCGATATTCTTTGGTCCGCCCGTTGGTCCGAGGACCGTCAGCAGCGGATTGCCGTGGCTCGTGATATCACTAAGA
ATAAAATTGCCGAGCGGCGCCAAGCCGCGCTCTATGAAATTTCAGAAGCCGTGCATGTGGCCGAAGATCTCTTAGCCCTG
TATCGGCATATTCATCAGATCATGGCCAAGTTATTACCGGCGGCGAATTTTGCCATTGCGCTTTATGATCAAGATCTTAA
TGACCTGGATTTTCCTTATCGTGTTGGGGTTGGCGAGCAGAATCGGGCGCAGTGTGCCAGCTTCGATCTGTTTACCGAGC
AAGTGATCCAAAGCGCCGAGTCTCTGCTGATTTGTCCGGTTGCCATGCCAGTTTCCCATGCTCAGGAGCAAGATTTTCAA
AATCAACCTATTAGCTGGCTTGGGGTCCCGTTAAAGCTACAAAAGGGCATAATTGGCGCGCTGATCATGCATAGCACTCC
GGATTCTCGGGCCTACACTAAGCAAGATTGCGAGCTGGTGGAATTTGTGTCGACCCAAATTGCCTTTGCGATTGAGCGGC
GGCAGATGTTGGCGCGTTTAGAGCATATTGCGCTTTATGACCAACTCACCCATTTGCCAAATCGTGAGTTGTTTTATGAC
AGATTCCAGAAGGCGCTATCACGCGCGAATCGTGAGTCGAGCTATTTCTCCTTACTCTATTTGGACTTAGACAAGTTTAA
ATGGGTGAATGATACCTATGGCCATGGTGTGGGCGACTTGTTACTGCAAATCACCGCCCAGCGGATTTTGGGATGCGTCA
GAAACTCGGATACGGTTGCTCGTTTTGGTGGCGATGAGTTTGTGATCCTATTGGAACGTGTCGATTCGGCGCAGAATACC
CTGCTCGTTGCCCAAAAAATTCTTGAAGTGCTTAACCACCCCTTCGAATTAGTCAATCAACAGATCCATATTTTGCCCAG
CATAGGCATTGCCCTTTATCCCGAACATGGTAAGGATGAAAAACAGCTGCTGTCCTGCGCCGATTCGGCGATGTATAAGG
CGAAGCGTAATGGGGGGAATCGGGTTGAAATGGGCTATCAAGGCTTAAAGACCTGCTATTTTGAATCCTTGAGCCCGCAT
CATCTCTAA

Upstream 100 bases:

>100_bases
GCTTGGTTTAGTGTTTAAGCCTGCGTGGAACTGTCATAATAATTAACCTACTCTAATAGTATGTTATTGTGTGGTGAGAG
CTTTAACGACTGGGGATAAA

Downstream 100 bases:

>100_bases
GCGTAAAAGAGATAGTTTTAGCATAAATAAAAATCCCCGATAAGTTTAAGATTATCGGGGATTTTTATAGCGTTGCTATG
CGTTACGGCATAAGCCGTTG

Product: diguanylate cyclase with PAS/PAC and GAF sensors

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MPQYDDVNEPQAWLESCVKNDGYTSLSQFVDLLLDAICVVDKTGHFEFVSAGAERIFGYTPDEMLGMQMLDLVYPPDRER
TLAAANDIMEGRFKLDFENRYVRKDGTLVDILWSARWSEDRQQRIAVARDITKNKIAERRQAALYEISEAVHVAEDLLAL
YRHIHQIMAKLLPAANFAIALYDQDLNDLDFPYRVGVGEQNRAQCASFDLFTEQVIQSAESLLICPVAMPVSHAQEQDFQ
NQPISWLGVPLKLQKGIIGALIMHSTPDSRAYTKQDCELVEFVSTQIAFAIERRQMLARLEHIALYDQLTHLPNRELFYD
RFQKALSRANRESSYFSLLYLDLDKFKWVNDTYGHGVGDLLLQITAQRILGCVRNSDTVARFGGDEFVILLERVDSAQNT
LLVAQKILEVLNHPFELVNQQIHILPSIGIALYPEHGKDEKQLLSCADSAMYKAKRNGGNRVEMGYQGLKTCYFESLSPH
HL

Sequences:

>Translated_482_residues
MPQYDDVNEPQAWLESCVKNDGYTSLSQFVDLLLDAICVVDKTGHFEFVSAGAERIFGYTPDEMLGMQMLDLVYPPDRER
TLAAANDIMEGRFKLDFENRYVRKDGTLVDILWSARWSEDRQQRIAVARDITKNKIAERRQAALYEISEAVHVAEDLLAL
YRHIHQIMAKLLPAANFAIALYDQDLNDLDFPYRVGVGEQNRAQCASFDLFTEQVIQSAESLLICPVAMPVSHAQEQDFQ
NQPISWLGVPLKLQKGIIGALIMHSTPDSRAYTKQDCELVEFVSTQIAFAIERRQMLARLEHIALYDQLTHLPNRELFYD
RFQKALSRANRESSYFSLLYLDLDKFKWVNDTYGHGVGDLLLQITAQRILGCVRNSDTVARFGGDEFVILLERVDSAQNT
LLVAQKILEVLNHPFELVNQQIHILPSIGIALYPEHGKDEKQLLSCADSAMYKAKRNGGNRVEMGYQGLKTCYFESLSPH
HL
>Mature_481_residues
PQYDDVNEPQAWLESCVKNDGYTSLSQFVDLLLDAICVVDKTGHFEFVSAGAERIFGYTPDEMLGMQMLDLVYPPDRERT
LAAANDIMEGRFKLDFENRYVRKDGTLVDILWSARWSEDRQQRIAVARDITKNKIAERRQAALYEISEAVHVAEDLLALY
RHIHQIMAKLLPAANFAIALYDQDLNDLDFPYRVGVGEQNRAQCASFDLFTEQVIQSAESLLICPVAMPVSHAQEQDFQN
QPISWLGVPLKLQKGIIGALIMHSTPDSRAYTKQDCELVEFVSTQIAFAIERRQMLARLEHIALYDQLTHLPNRELFYDR
FQKALSRANRESSYFSLLYLDLDKFKWVNDTYGHGVGDLLLQITAQRILGCVRNSDTVARFGGDEFVILLERVDSAQNTL
LVAQKILEVLNHPFELVNQQIHILPSIGIALYPEHGKDEKQLLSCADSAMYKAKRNGGNRVEMGYQGLKTCYFESLSPHH
L

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=40.4761904761905, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=41.25, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=37.3563218390805, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787262, Length=210, Percent_Identity=30, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788956, Length=226, Percent_Identity=32.3008849557522, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=35.4285714285714, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=30.8510638297872, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=34.6153846153846, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=31.1764705882353, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=221, Percent_Identity=24.4343891402715, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=34.5238095238095, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 54943; Mature: 54812

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQYDDVNEPQAWLESCVKNDGYTSLSQFVDLLLDAICVVDKTGHFEFVSAGAERIFGYT
CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
PDEMLGMQMLDLVYPPDRERTLAAANDIMEGRFKLDFENRYVRKDGTLVDILWSARWSED
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCEEECCCCEEEEEHHCCCCHH
RQQRIAVARDITKNKIAERRQAALYEISEAVHVAEDLLALYRHIHQIMAKLLPAANFAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
LYDQDLNDLDFPYRVGVGEQNRAQCASFDLFTEQVIQSAESLLICPVAMPVSHAQEQDFQ
EECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHC
NQPISWLGVPLKLQKGIIGALIMHSTPDSRAYTKQDCELVEFVSTQIAFAIERRQMLARL
CCCHHHCCCCHHHHCCHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHIALYDQLTHLPNRELFYDRFQKALSRANRESSYFSLLYLDLDKFKWVNDTYGHGVGDL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHCCCCCCCCCCHHHH
LLQITAQRILGCVRNSDTVARFGGDEFVILLERVDSAQNTLLVAQKILEVLNHPFELVNQ
HHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCHHHHCC
QIHILPSIGIALYPEHGKDEKQLLSCADSAMYKAKRNGGNRVEMGYQGLKTCYFESLSPH
CEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCC
HL
CC
>Mature Secondary Structure 
PQYDDVNEPQAWLESCVKNDGYTSLSQFVDLLLDAICVVDKTGHFEFVSAGAERIFGYT
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
PDEMLGMQMLDLVYPPDRERTLAAANDIMEGRFKLDFENRYVRKDGTLVDILWSARWSED
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCEEECCCCEEEEEHHCCCCHH
RQQRIAVARDITKNKIAERRQAALYEISEAVHVAEDLLALYRHIHQIMAKLLPAANFAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
LYDQDLNDLDFPYRVGVGEQNRAQCASFDLFTEQVIQSAESLLICPVAMPVSHAQEQDFQ
EECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHC
NQPISWLGVPLKLQKGIIGALIMHSTPDSRAYTKQDCELVEFVSTQIAFAIERRQMLARL
CCCHHHCCCCHHHHCCHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHIALYDQLTHLPNRELFYDRFQKALSRANRESSYFSLLYLDLDKFKWVNDTYGHGVGDL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHCCCCCCCCCCHHHH
LLQITAQRILGCVRNSDTVARFGGDEFVILLERVDSAQNTLLVAQKILEVLNHPFELVNQ
HHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCHHHHCC
QIHILPSIGIALYPEHGKDEKQLLSCADSAMYKAKRNGGNRVEMGYQGLKTCYFESLSPH
CEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCC
HL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]