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The map label for this gene is yeaM [H]

Identifier: 117919343

GI number: 117919343

Start: 1037402

End: 1038280

Strand: Direct

Name: yeaM [H]

Synonym: Shewana3_0891

Alternate gene names: 117919343

Gene position: 1037402-1038280 (Clockwise)

Preceding gene: 117919341

Following gene: 117919344

Centisome position: 20.86

GC content: 40.96

Gene sequence:

>879_bases
ATGGGATTACGCTATGCTACAATTCTTTTATTTGGCCGAATAACGTCATATGGACAAGTAATAATGTTAAGTCGCCAACC
TGATTCGATTAATACTATTATTGAGCAAGCACCTAATATGCCTTGCTTTGTAAAAACGATTGAGATGCAGAAGGGGTATG
TGGATGTTTTACATAAGCACTGTTGGCATCAGCTTATTCTTCCGCTTCAAGGCCTGTTACAGACAGAAGCAAATGGGGCA
CTGTTCTTAGTTCCCCATACCACAGCGCTTTTTGTGCCAGCAGGGGTGATACATGAGTCTGTTGCGATTACTGATACTTG
TTTTATTGGTGTCTATCTGAATCCAATGTGTGGTCGAGATTATGGCGCCACGATAAAACCCGTCGCTATGAGTGCTTTTC
TAAGGGAATTAGTGTTAACGATCAGAAAACAATGTGTTTTTAATACCTCAATGAATGTTGAACCAATAGCTCTGCCGACA
ATACAGCGTTTGCTTGAGGTGTTATACGATCAAATTAATAGTGCAGAGGGACAGACTTTTAAGTTATTGATACCACAAGA
TAGGCGCCTAAAATTGATTTTTGAGCACTTAACTCAAACGCCAGCTTTAGATTTATCTTTAGCGAAATGGGGTGAGATGG
TTGGGGCATCGGAACGAACATTGTCGAGGTTATTTGTTAGGGAGTTTGGTTCTTCCTTCGGATTATGGCGCCAACATTTA
CGGTTGATCTATTCGCTATCACTATTGGCCACTAACCTATCAATACAGAATGTGGCCCACCAAATTGGTTATCAAAATGA
TTCATCCTATATCAAAGCTTTCAAGGAGCGTTTTGGGATGACGCCACAGCGATTTCGGTTAGGCGATCATGGGATATAA

Upstream 100 bases:

>100_bases
TTGTAGTTTTTGCTGGCGGCCCAATCATTAAAATATCCTGGACCTTCATAGCTTTCATGAATAATGCAATGAATCTGCAT
TGAGTTTTCCTGTGTCTTTT

Downstream 100 bases:

>100_bases
CGCTATTACGACTTATGGTAAAGAATGCTCTATCCAGTTAGAATTTATTAAATTTAATCAATATTTTGAGTGCTTTTTGG
CCTGAGTGTTCATGGGCGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MGLRYATILLFGRITSYGQVIMLSRQPDSINTIIEQAPNMPCFVKTIEMQKGYVDVLHKHCWHQLILPLQGLLQTEANGA
LFLVPHTTALFVPAGVIHESVAITDTCFIGVYLNPMCGRDYGATIKPVAMSAFLRELVLTIRKQCVFNTSMNVEPIALPT
IQRLLEVLYDQINSAEGQTFKLLIPQDRRLKLIFEHLTQTPALDLSLAKWGEMVGASERTLSRLFVREFGSSFGLWRQHL
RLIYSLSLLATNLSIQNVAHQIGYQNDSSYIKAFKERFGMTPQRFRLGDHGI

Sequences:

>Translated_292_residues
MGLRYATILLFGRITSYGQVIMLSRQPDSINTIIEQAPNMPCFVKTIEMQKGYVDVLHKHCWHQLILPLQGLLQTEANGA
LFLVPHTTALFVPAGVIHESVAITDTCFIGVYLNPMCGRDYGATIKPVAMSAFLRELVLTIRKQCVFNTSMNVEPIALPT
IQRLLEVLYDQINSAEGQTFKLLIPQDRRLKLIFEHLTQTPALDLSLAKWGEMVGASERTLSRLFVREFGSSFGLWRQHL
RLIYSLSLLATNLSIQNVAHQIGYQNDSSYIKAFKERFGMTPQRFRLGDHGI
>Mature_291_residues
GLRYATILLFGRITSYGQVIMLSRQPDSINTIIEQAPNMPCFVKTIEMQKGYVDVLHKHCWHQLILPLQGLLQTEANGAL
FLVPHTTALFVPAGVIHESVAITDTCFIGVYLNPMCGRDYGATIKPVAMSAFLRELVLTIRKQCVFNTSMNVEPIALPTI
QRLLEVLYDQINSAEGQTFKLLIPQDRRLKLIFEHLTQTPALDLSLAKWGEMVGASERTLSRLFVREFGSSFGLWRQHLR
LIYSLSLLATNLSIQNVAHQIGYQNDSSYIKAFKERFGMTPQRFRLGDHGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=231, Percent_Identity=32.034632034632, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 33011; Mature: 32880

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLRYATILLFGRITSYGQVIMLSRQPDSINTIIEQAPNMPCFVKTIEMQKGYVDVLHKH
CCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEHHHHCHHHHHHHHH
CWHQLILPLQGLLQTEANGALFLVPHTTALFVPAGVIHESVAITDTCFIGVYLNPMCGRD
HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCC
YGATIKPVAMSAFLRELVLTIRKQCVFNTSMNVEPIALPTIQRLLEVLYDQINSAEGQTF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
KLLIPQDRRLKLIFEHLTQTPALDLSLAKWGEMVGASERTLSRLFVREFGSSFGLWRQHL
EEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHH
RLIYSLSLLATNLSIQNVAHQIGYQNDSSYIKAFKERFGMTPQRFRLGDHGI
HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHCCCCCCCC
>Mature Secondary Structure 
GLRYATILLFGRITSYGQVIMLSRQPDSINTIIEQAPNMPCFVKTIEMQKGYVDVLHKH
CCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEHHHHCHHHHHHHHH
CWHQLILPLQGLLQTEANGALFLVPHTTALFVPAGVIHESVAITDTCFIGVYLNPMCGRD
HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCC
YGATIKPVAMSAFLRELVLTIRKQCVFNTSMNVEPIALPTIQRLLEVLYDQINSAEGQTF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
KLLIPQDRRLKLIFEHLTQTPALDLSLAKWGEMVGASERTLSRLFVREFGSSFGLWRQHL
EEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHH
RLIYSLSLLATNLSIQNVAHQIGYQNDSSYIKAFKERFGMTPQRFRLGDHGI
HHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]