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The map label for this gene is rbcR [H]

Identifier: 117919287

GI number: 117919287

Start: 968003

End: 968986

Strand: Direct

Name: rbcR [H]

Synonym: Shewana3_0835

Alternate gene names: 117919287

Gene position: 968003-968986 (Clockwise)

Preceding gene: 117919285

Following gene: 117919288

Centisome position: 19.47

GC content: 50.91

Gene sequence:

>984_bases
ATGTCTATGGGTAAGTCTTCCCAAGGCCAACTTAAACTTCGGCACTTAAGCTTTCGTTTGCTCGAGGTGTATGTACAGGT
TGTCAGGCTTGGCAATATCTCGGCCGCTGCGCGCGCCTTGCATCTCACCCAGCCGACAGTTTCGCTACAACTGAAGAAAT
TGGCCGATATTTTGGGCGAGCCTCTATTGATAAGCGCAGAGGGGCGAATGCAGCCAACCTTAGTCGGGCAAGAGCTCTAT
CGGGTTGCCTGCGATACCTTGAGTCGTTTCGAAGACTTCGATGCCTTTATCCAACAGGCAAGGGGCGGCAGTGTGGGGCA
TATCAATATTGGTCTAGTGACCACGGCAAAATACGTGATGCCTCGGATTCTAGGGGCCTTCTATCGCCAATTTCCGCAGG
TTAAAGTCACCTTAAATATTGGCAACCGTGCACATATTTTGGGGCGATTCGAGCGCCAAGAAGATGATTTATATCTCTTT
AGTCATCCACCCAGTGGTGAGCATGTGTTATCGGCGCGGATCATTAAAAATCCGCTGCAACTAATAGCCCCTAAGGATCA
TTGGGCGGTTGAGCGCCAACACCTCAACTTTAATGAGTTGAAACAAGAGCGCTTTATCATGCGCGAGCCGGGCTCTGCCA
CACGGCTGATGTTTGAATCTTGGTGTAGTGCCCAAGGGATTGCCTTGAGCGACACTATGCAAATTGAGAGCAACGAGGCG
ATTCGTTTAAGCGTGGCGTCGGGCTTAGGCTTATCGGTGATCTCGGCCCACACGTTGCAGGAAGGGCGTGAAAAACCCGC
AATATTGTCGGTGAAAGGATTTCCACTGGAGAGTAACTGGTATCTGGTGGGGCGCAGGGACAGGCGCTTACCCTATGCCG
CTATGCAGTTGGTGTCGTTTATGGCGAGCCAACTTGCAGACTGTATTGAACCTGAATGGGTTGCTGCGGATATTCAGCAG
TTAAGCCAGCGATTTAGTGGATGA

Upstream 100 bases:

>100_bases
ATAATGCGCCGAGAAAGTTCTGCGGGCATCGATGGCTGGAGATTCTGAACCCAATTCGTTATATTGAAAAATAAATTGTT
TGCTGATTAGGTATAGATAA

Downstream 100 bases:

>100_bases
TACTCGTCTTGGCGCGGCAGTGAGGATAGGGTAGTTTAAGAAAATATGTCGGTGCCGATAATCAGGGGAATATAAATGGA
GCTAGATTCGTTGCTGATGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSMGKSSQGQLKLRHLSFRLLEVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADILGEPLLISAEGRMQPTLVGQELY
RVACDTLSRFEDFDAFIQQARGGSVGHINIGLVTTAKYVMPRILGAFYRQFPQVKVTLNIGNRAHILGRFERQEDDLYLF
SHPPSGEHVLSARIIKNPLQLIAPKDHWAVERQHLNFNELKQERFIMREPGSATRLMFESWCSAQGIALSDTMQIESNEA
IRLSVASGLGLSVISAHTLQEGREKPAILSVKGFPLESNWYLVGRRDRRLPYAAMQLVSFMASQLADCIEPEWVAADIQQ
LSQRFSG

Sequences:

>Translated_327_residues
MSMGKSSQGQLKLRHLSFRLLEVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADILGEPLLISAEGRMQPTLVGQELY
RVACDTLSRFEDFDAFIQQARGGSVGHINIGLVTTAKYVMPRILGAFYRQFPQVKVTLNIGNRAHILGRFERQEDDLYLF
SHPPSGEHVLSARIIKNPLQLIAPKDHWAVERQHLNFNELKQERFIMREPGSATRLMFESWCSAQGIALSDTMQIESNEA
IRLSVASGLGLSVISAHTLQEGREKPAILSVKGFPLESNWYLVGRRDRRLPYAAMQLVSFMASQLADCIEPEWVAADIQQ
LSQRFSG
>Mature_326_residues
SMGKSSQGQLKLRHLSFRLLEVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADILGEPLLISAEGRMQPTLVGQELYR
VACDTLSRFEDFDAFIQQARGGSVGHINIGLVTTAKYVMPRILGAFYRQFPQVKVTLNIGNRAHILGRFERQEDDLYLFS
HPPSGEHVLSARIIKNPLQLIAPKDHWAVERQHLNFNELKQERFIMREPGSATRLMFESWCSAQGIALSDTMQIESNEAI
RLSVASGLGLSVISAHTLQEGREKPAILSVKGFPLESNWYLVGRRDRRLPYAAMQLVSFMASQLADCIEPEWVAADIQQL
SQRFSG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL1S1) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=255, Percent_Identity=23.921568627451, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=26.7489711934156, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788481, Length=248, Percent_Identity=23.7903225806452, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788887, Length=255, Percent_Identity=23.921568627451, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=254, Percent_Identity=26.3779527559055, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=277, Percent_Identity=22.7436823104693, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=143, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=283, Percent_Identity=24.7349823321555, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=243, Percent_Identity=23.4567901234568, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36680; Mature: 36549

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMGKSSQGQLKLRHLSFRLLEVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADILGE
CCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCHHHHHHHHHHHHHCC
PLLISAEGRMQPTLVGQELYRVACDTLSRFEDFDAFIQQARGGSVGHINIGLVTTAKYVM
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH
PRILGAFYRQFPQVKVTLNIGNRAHILGRFERQEDDLYLFSHPPSGEHVLSARIIKNPLQ
HHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCHHH
LIAPKDHWAVERQHLNFNELKQERFIMREPGSATRLMFESWCSAQGIALSDTMQIESNEA
HCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECEEEECCCCE
IRLSVASGLGLSVISAHTLQEGREKPAILSVKGFPLESNWYLVGRRDRRLPYAAMQLVSF
EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHH
MASQLADCIEPEWVAADIQQLSQRFSG
HHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SMGKSSQGQLKLRHLSFRLLEVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADILGE
CCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCHHHHHHHHHHHHHCC
PLLISAEGRMQPTLVGQELYRVACDTLSRFEDFDAFIQQARGGSVGHINIGLVTTAKYVM
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH
PRILGAFYRQFPQVKVTLNIGNRAHILGRFERQEDDLYLFSHPPSGEHVLSARIIKNPLQ
HHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCHHH
LIAPKDHWAVERQHLNFNELKQERFIMREPGSATRLMFESWCSAQGIALSDTMQIESNEA
HCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECEEEECCCCE
IRLSVASGLGLSVISAHTLQEGREKPAILSVKGFPLESNWYLVGRRDRRLPYAAMQLVSF
EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHH
MASQLADCIEPEWVAADIQQLSQRFSG
HHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432695 [H]