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The map label for this gene is yigB [H]

Identifier: 117918851

GI number: 117918851

Start: 454447

End: 455169

Strand: Direct

Name: yigB [H]

Synonym: Shewana3_0394

Alternate gene names: 117918851

Gene position: 454447-455169 (Clockwise)

Preceding gene: 117918850

Following gene: 117918852

Centisome position: 9.14

GC content: 52.01

Gene sequence:

>723_bases
ATGCGTTGTTATCTTAGACCCCAGAATATTCGTGCGATCAGCTTCGATCTTGACGATACCTTATACGATAACGAGCCTCA
TATTCTGAATGCCGAAGCCGAGCTAACGCAGTTTTTGCATCAGGCTTTTCCGCTGACTCAAGCTTGGCAACCGCAGCAAT
GGCGACTGCTCAAGTTACAGTTGCTACAGCAAAATCCTGCCTTAGCCCATGATACCTCGGCGGCGCGAATTGCGACTCTG
CATAAAGGTCTTTCGCTGCTCGGTTATAGCGAGTCGGAGGCAAAACGGGGTGCGCAGGAAGGGTTGGATTGTTTCTATTT
CCATCGCAGCCATTTTCAGGTTTCAGACGAAGTCTTGGCGCTGCTCGCGCGCTTATCGGCCCATTTTCGGTTGATTGGTA
TCACCAATGGCAATGTGGACGCACAGCGCATTGGCTTGAGTGAGGTGTTCGAATTTGTGCTGCATCCTGGTAGTGGTGTA
CGGATGAAACCCGCTAAAGATATGTTTTCACAGGCTTGTGAAAGGCTGGATATCGGCTTAGACGAACTGCTGCACGTGGG
TGATAGTATGAATGCCGATGTTCGCGGTGCGCGCTTAGCGGGCTGCCAGTCGGTCTGGCTCAACCCGAGTTTTGGCCGCG
TGGCGTCGCTGCCGATAGCAGCCCTATTACCCCATATGGAAATTGCGACCCTCGATGCTCTGCTGGAGATGTTACTGCCA
TAA

Upstream 100 bases:

>100_bases
ACCTGTCGACCACGCAAATTTATACCAGTTTAGATTTCCAACACTTAGCTAAGGTGTATGATAACGCCCATCCTAGAGCG
AAAAAACAACAGGATAAATA

Downstream 100 bases:

>100_bases
TTTGGTTTAAGGAAAGTTGAGCTAAGTTATCCGCTGAATTAAGCGATAGCTTAAGGTGATAAGGATCAAAGATTGCTTCA
CGGCTTTGCCGTAGAGTGTT

Product: HAD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRCYLRPQNIRAISFDLDDTLYDNEPHILNAEAELTQFLHQAFPLTQAWQPQQWRLLKLQLLQQNPALAHDTSAARIATL
HKGLSLLGYSESEAKRGAQEGLDCFYFHRSHFQVSDEVLALLARLSAHFRLIGITNGNVDAQRIGLSEVFEFVLHPGSGV
RMKPAKDMFSQACERLDIGLDELLHVGDSMNADVRGARLAGCQSVWLNPSFGRVASLPIAALLPHMEIATLDALLEMLLP

Sequences:

>Translated_240_residues
MRCYLRPQNIRAISFDLDDTLYDNEPHILNAEAELTQFLHQAFPLTQAWQPQQWRLLKLQLLQQNPALAHDTSAARIATL
HKGLSLLGYSESEAKRGAQEGLDCFYFHRSHFQVSDEVLALLARLSAHFRLIGITNGNVDAQRIGLSEVFEFVLHPGSGV
RMKPAKDMFSQACERLDIGLDELLHVGDSMNADVRGARLAGCQSVWLNPSFGRVASLPIAALLPHMEIATLDALLEMLLP
>Mature_240_residues
MRCYLRPQNIRAISFDLDDTLYDNEPHILNAEAELTQFLHQAFPLTQAWQPQQWRLLKLQLLQQNPALAHDTSAARIATL
HKGLSLLGYSESEAKRGAQEGLDCFYFHRSHFQVSDEVLALLARLSAHFRLIGITNGNVDAQRIGLSEVFEFVLHPGSGV
RMKPAKDMFSQACERLDIGLDELLHVGDSMNADVRGARLAGCQSVWLNPSFGRVASLPIAALLPHMEIATLDALLEMLLP

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjjG [H]

Homologues:

Organism=Escherichia coli, GI2367295, Length=238, Percent_Identity=35.7142857142857, Blast_Score=154, Evalue=6e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 26793; Mature: 26793

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCYLRPQNIRAISFDLDDTLYDNEPHILNAEAELTQFLHQAFPLTQAWQPQQWRLLKLQ
CCCEECCCCCEEEEECCCCCCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LLQQNPALAHDTSAARIATLHKGLSLLGYSESEAKRGAQEGLDCFYFHRSHFQVSDEVLA
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHH
LLARLSAHFRLIGITNGNVDAQRIGLSEVFEFVLHPGSGVRMKPAKDMFSQACERLDIGL
HHHHHHHCEEEEEEECCCCCHHHCCHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHCCCH
DELLHVGDSMNADVRGARLAGCQSVWLNPSFGRVASLPIAALLPHMEIATLDALLEMLLP
HHHHHCCCCCCCCCCCHHHCCCHHEECCCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRCYLRPQNIRAISFDLDDTLYDNEPHILNAEAELTQFLHQAFPLTQAWQPQQWRLLKLQ
CCCEECCCCCEEEEECCCCCCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LLQQNPALAHDTSAARIATLHKGLSLLGYSESEAKRGAQEGLDCFYFHRSHFQVSDEVLA
HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHH
LLARLSAHFRLIGITNGNVDAQRIGLSEVFEFVLHPGSGVRMKPAKDMFSQACERLDIGL
HHHHHHHCEEEEEEECCCCCHHHCCHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHCCCH
DELLHVGDSMNADVRGARLAGCQSVWLNPSFGRVASLPIAALLPHMEIATLDALLEMLLP
HHHHHCCCCCCCCCCCHHHCCCHHEECCCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254268; 1379743; 9278503; 6379604; 6324092 [H]