Definition | Borrelia afzelii PKo plasmid lp28, complete sequence. |
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Accession | NC_008568 |
Length | 28,533 |
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The map label for this gene is 117621831
Identifier: 117621831
GI number: 117621831
Start: 26427
End: 27755
Strand: Reverse
Name: 117621831
Synonym: BAPKO_4531
Alternate gene names: NA
Gene position: 27755-26427 (Counterclockwise)
Preceding gene: 117621832
Following gene: 117621830
Centisome position: 97.27
GC content: 29.42
Gene sequence:
>1329_bases TTGTTGAGTAAACATCTTGATTATTTTGCAAAAATAGGGCAATCTTATTGTTATGAAAAACAAAATTTTAACAAGAGGTT GCCCGAAATGCAAAACCGATTCAATTCTAGATTAGAACAAAATACAAAAATTGTCAACAATGGAAAAAAATTCATTTTCA AAAAACTTCACTTTCAAATTCTTGGGGAAAATTCAAAAAAAACCGACCCAAATTTGAAAGAAATTTCCGATTTACGGCTC AGTTCACACATTGGTAGAAAAGAAATTGAATACCAAAGACTGCTAAAAGTGTCGTGGCTTTTAGAAAAAAAATACCAAAA ATACCTAAAATCCCAAAAACTTGAAACCTATCAAATCAAGGACATAATAGAGGTCGTAAATTCAATGCTAGCAAAAAATA ATTACAAAACCGTAGCTAAAAGCACAATCCAAAAAGATTTGAAAAAACTTATCAAAATGGGTTTAGTGGCTAACTATTCT AAAAGTTTTGGTAAAAATAATGGCGGCTTTTCCCTTTACAAGCCAAATACCAATATCTGGCAACATAGAGTAGAAATTAT AAGGGGATATTTTGAAAATGAAATTAGAGACTACACAAAAGACAAAAGAATAGTCACTGTCTTCAAAAAAGAGATTGACG AGCACACTTTCCCAAAAGTAAATTCATCAAATAACACGCCATCAAATACCACACTTATATATAATATAAAAGATAGTAAT AAGATAAAGAATTCTATAGAAAACTTTTCTATAAAAAATAACAAAAATTTTACAGAAAATAACCAAAAAAAAGAAAAAAT TGAAAAGCAAAAAATTGAAAAAGAAAATTTAATCGAAAAAAAAGAAAAAAAAGAAAAAATGAAATTTACTTACAAAACAA GTTTTGCAGAATATCAAGAAACAAAACTAACCACAAAATACAAAATTTCACCAAACCATTTTGTCGATTTGTATAGGTTT TCAAACAATTCGAACACCTACACAAACGCACTGATCAATCTAGAATGTTTCCTAGTATATCTTTCACAAGAATACCATGT GAACGACATTGTGAAATTCTACGTGGCTAAATTCAAAACCAAATACAAGAGTAAAATATGGTTCACGAGTCCTAAATCCA AGGTTAATGATTTTTTCGATTTGGTGGGTGAATTCAAAGATAATTTCAAAAGTGTCTATAAGGGTGACAGTGAACAACGT GTTGTTTTTCAAGGTCAGGTTGGGTATTTTGATGGTTCAATTTTTCGTAAAGTGGACAGTGCTAGCAATATTGCAGAAAT TGCACAAAATTTTTTGGAGGGTTTGAACAATGCAAATTGCGGTAAATAA
Upstream 100 bases:
>100_bases AAAGCCTAAAATAATTAAAATTGTTAAGAAAATACCAATATTTTAGCTTGGTTGAAAAACTCGGCTGTAGTGTGGATTTT ATGATTTTTGATAATGATTT
Downstream 100 bases:
>100_bases CAAAAATATTGGCAAGAAATATATTCTTTCGAATCGGGATTCAGAAAATATTGTGATAGGCAGTCTTTTGAACAATACGG CCCAAATTGAAAAAGTTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 442; Mature: 442
Protein sequence:
>442_residues MLSKHLDYFAKIGQSYCYEKQNFNKRLPEMQNRFNSRLEQNTKIVNNGKKFIFKKLHFQILGENSKKTDPNLKEISDLRL SSHIGRKEIEYQRLLKVSWLLEKKYQKYLKSQKLETYQIKDIIEVVNSMLAKNNYKTVAKSTIQKDLKKLIKMGLVANYS KSFGKNNGGFSLYKPNTNIWQHRVEIIRGYFENEIRDYTKDKRIVTVFKKEIDEHTFPKVNSSNNTPSNTTLIYNIKDSN KIKNSIENFSIKNNKNFTENNQKKEKIEKQKIEKENLIEKKEKKEKMKFTYKTSFAEYQETKLTTKYKISPNHFVDLYRF SNNSNTYTNALINLECFLVYLSQEYHVNDIVKFYVAKFKTKYKSKIWFTSPKSKVNDFFDLVGEFKDNFKSVYKGDSEQR VVFQGQVGYFDGSIFRKVDSASNIAEIAQNFLEGLNNANCGK
Sequences:
>Translated_442_residues MLSKHLDYFAKIGQSYCYEKQNFNKRLPEMQNRFNSRLEQNTKIVNNGKKFIFKKLHFQILGENSKKTDPNLKEISDLRL SSHIGRKEIEYQRLLKVSWLLEKKYQKYLKSQKLETYQIKDIIEVVNSMLAKNNYKTVAKSTIQKDLKKLIKMGLVANYS KSFGKNNGGFSLYKPNTNIWQHRVEIIRGYFENEIRDYTKDKRIVTVFKKEIDEHTFPKVNSSNNTPSNTTLIYNIKDSN KIKNSIENFSIKNNKNFTENNQKKEKIEKQKIEKENLIEKKEKKEKMKFTYKTSFAEYQETKLTTKYKISPNHFVDLYRF SNNSNTYTNALINLECFLVYLSQEYHVNDIVKFYVAKFKTKYKSKIWFTSPKSKVNDFFDLVGEFKDNFKSVYKGDSEQR VVFQGQVGYFDGSIFRKVDSASNIAEIAQNFLEGLNNANCGK >Mature_442_residues MLSKHLDYFAKIGQSYCYEKQNFNKRLPEMQNRFNSRLEQNTKIVNNGKKFIFKKLHFQILGENSKKTDPNLKEISDLRL SSHIGRKEIEYQRLLKVSWLLEKKYQKYLKSQKLETYQIKDIIEVVNSMLAKNNYKTVAKSTIQKDLKKLIKMGLVANYS KSFGKNNGGFSLYKPNTNIWQHRVEIIRGYFENEIRDYTKDKRIVTVFKKEIDEHTFPKVNSSNNTPSNTTLIYNIKDSN KIKNSIENFSIKNNKNFTENNQKKEKIEKQKIEKENLIEKKEKKEKMKFTYKTSFAEYQETKLTTKYKISPNHFVDLYRF SNNSNTYTNALINLECFLVYLSQEYHVNDIVKFYVAKFKTKYKSKIWFTSPKSKVNDFFDLVGEFKDNFKSVYKGDSEQR VVFQGQVGYFDGSIFRKVDSASNIAEIAQNFLEGLNNANCGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52228; Mature: 52228
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSKHLDYFAKIGQSYCYEKQNFNKRLPEMQNRFNSRLEQNTKIVNNGKKFIFKKLHFQI CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHH LGENSKKTDPNLKEISDLRLSSHIGRKEIEYQRLLKVSWLLEKKYQKYLKSQKLETYQIK CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH DIIEVVNSMLAKNNYKTVAKSTIQKDLKKLIKMGLVANYSKSFGKNNGGFSLYKPNTNIW HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH QHRVEIIRGYFENEIRDYTKDKRIVTVFKKEIDEHTFPKVNSSNNTPSNTTLIYNIKDSN HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCH KIKNSIENFSIKNNKNFTENNQKKEKIEKQKIEKENLIEKKEKKEKMKFTYKTSFAEYQE HHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TKLTTKYKISPNHFVDLYRFSNNSNTYTNALINLECFLVYLSQEYHVNDIVKFYVAKFKT HHCCEEEEECCCCEEEEEEECCCCCCHHHHHEEHEEEEEEECCCCCHHHHHHHHHHHHHH KYKSKIWFTSPKSKVNDFFDLVGEFKDNFKSVYKGDSEQRVVFQGQVGYFDGSIFRKVDS HHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHC ASNIAEIAQNFLEGLNNANCGK HHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLSKHLDYFAKIGQSYCYEKQNFNKRLPEMQNRFNSRLEQNTKIVNNGKKFIFKKLHFQI CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHH LGENSKKTDPNLKEISDLRLSSHIGRKEIEYQRLLKVSWLLEKKYQKYLKSQKLETYQIK CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH DIIEVVNSMLAKNNYKTVAKSTIQKDLKKLIKMGLVANYSKSFGKNNGGFSLYKPNTNIW HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHH QHRVEIIRGYFENEIRDYTKDKRIVTVFKKEIDEHTFPKVNSSNNTPSNTTLIYNIKDSN HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCH KIKNSIENFSIKNNKNFTENNQKKEKIEKQKIEKENLIEKKEKKEKMKFTYKTSFAEYQE HHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TKLTTKYKISPNHFVDLYRFSNNSNTYTNALINLECFLVYLSQEYHVNDIVKFYVAKFKT HHCCEEEEECCCCEEEEEEECCCCCCHHHHHEEHEEEEEEECCCCCHHHHHHHHHHHHHH KYKSKIWFTSPKSKVNDFFDLVGEFKDNFKSVYKGDSEQRVVFQGQVGYFDGSIFRKVDS HHHCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHC ASNIAEIAQNFLEGLNNANCGK HHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA