Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

Click here to switch to the map view.

The map label for this gene is 117621831

Identifier: 117621831

GI number: 117621831

Start: 26427

End: 27755

Strand: Reverse

Name: 117621831

Synonym: BAPKO_4531

Alternate gene names: NA

Gene position: 27755-26427 (Counterclockwise)

Preceding gene: 117621832

Following gene: 117621830

Centisome position: 97.27

GC content: 29.42

Gene sequence:

>1329_bases
TTGTTGAGTAAACATCTTGATTATTTTGCAAAAATAGGGCAATCTTATTGTTATGAAAAACAAAATTTTAACAAGAGGTT
GCCCGAAATGCAAAACCGATTCAATTCTAGATTAGAACAAAATACAAAAATTGTCAACAATGGAAAAAAATTCATTTTCA
AAAAACTTCACTTTCAAATTCTTGGGGAAAATTCAAAAAAAACCGACCCAAATTTGAAAGAAATTTCCGATTTACGGCTC
AGTTCACACATTGGTAGAAAAGAAATTGAATACCAAAGACTGCTAAAAGTGTCGTGGCTTTTAGAAAAAAAATACCAAAA
ATACCTAAAATCCCAAAAACTTGAAACCTATCAAATCAAGGACATAATAGAGGTCGTAAATTCAATGCTAGCAAAAAATA
ATTACAAAACCGTAGCTAAAAGCACAATCCAAAAAGATTTGAAAAAACTTATCAAAATGGGTTTAGTGGCTAACTATTCT
AAAAGTTTTGGTAAAAATAATGGCGGCTTTTCCCTTTACAAGCCAAATACCAATATCTGGCAACATAGAGTAGAAATTAT
AAGGGGATATTTTGAAAATGAAATTAGAGACTACACAAAAGACAAAAGAATAGTCACTGTCTTCAAAAAAGAGATTGACG
AGCACACTTTCCCAAAAGTAAATTCATCAAATAACACGCCATCAAATACCACACTTATATATAATATAAAAGATAGTAAT
AAGATAAAGAATTCTATAGAAAACTTTTCTATAAAAAATAACAAAAATTTTACAGAAAATAACCAAAAAAAAGAAAAAAT
TGAAAAGCAAAAAATTGAAAAAGAAAATTTAATCGAAAAAAAAGAAAAAAAAGAAAAAATGAAATTTACTTACAAAACAA
GTTTTGCAGAATATCAAGAAACAAAACTAACCACAAAATACAAAATTTCACCAAACCATTTTGTCGATTTGTATAGGTTT
TCAAACAATTCGAACACCTACACAAACGCACTGATCAATCTAGAATGTTTCCTAGTATATCTTTCACAAGAATACCATGT
GAACGACATTGTGAAATTCTACGTGGCTAAATTCAAAACCAAATACAAGAGTAAAATATGGTTCACGAGTCCTAAATCCA
AGGTTAATGATTTTTTCGATTTGGTGGGTGAATTCAAAGATAATTTCAAAAGTGTCTATAAGGGTGACAGTGAACAACGT
GTTGTTTTTCAAGGTCAGGTTGGGTATTTTGATGGTTCAATTTTTCGTAAAGTGGACAGTGCTAGCAATATTGCAGAAAT
TGCACAAAATTTTTTGGAGGGTTTGAACAATGCAAATTGCGGTAAATAA

Upstream 100 bases:

>100_bases
AAAGCCTAAAATAATTAAAATTGTTAAGAAAATACCAATATTTTAGCTTGGTTGAAAAACTCGGCTGTAGTGTGGATTTT
ATGATTTTTGATAATGATTT

Downstream 100 bases:

>100_bases
CAAAAATATTGGCAAGAAATATATTCTTTCGAATCGGGATTCAGAAAATATTGTGATAGGCAGTCTTTTGAACAATACGG
CCCAAATTGAAAAAGTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MLSKHLDYFAKIGQSYCYEKQNFNKRLPEMQNRFNSRLEQNTKIVNNGKKFIFKKLHFQILGENSKKTDPNLKEISDLRL
SSHIGRKEIEYQRLLKVSWLLEKKYQKYLKSQKLETYQIKDIIEVVNSMLAKNNYKTVAKSTIQKDLKKLIKMGLVANYS
KSFGKNNGGFSLYKPNTNIWQHRVEIIRGYFENEIRDYTKDKRIVTVFKKEIDEHTFPKVNSSNNTPSNTTLIYNIKDSN
KIKNSIENFSIKNNKNFTENNQKKEKIEKQKIEKENLIEKKEKKEKMKFTYKTSFAEYQETKLTTKYKISPNHFVDLYRF
SNNSNTYTNALINLECFLVYLSQEYHVNDIVKFYVAKFKTKYKSKIWFTSPKSKVNDFFDLVGEFKDNFKSVYKGDSEQR
VVFQGQVGYFDGSIFRKVDSASNIAEIAQNFLEGLNNANCGK

Sequences:

>Translated_442_residues
MLSKHLDYFAKIGQSYCYEKQNFNKRLPEMQNRFNSRLEQNTKIVNNGKKFIFKKLHFQILGENSKKTDPNLKEISDLRL
SSHIGRKEIEYQRLLKVSWLLEKKYQKYLKSQKLETYQIKDIIEVVNSMLAKNNYKTVAKSTIQKDLKKLIKMGLVANYS
KSFGKNNGGFSLYKPNTNIWQHRVEIIRGYFENEIRDYTKDKRIVTVFKKEIDEHTFPKVNSSNNTPSNTTLIYNIKDSN
KIKNSIENFSIKNNKNFTENNQKKEKIEKQKIEKENLIEKKEKKEKMKFTYKTSFAEYQETKLTTKYKISPNHFVDLYRF
SNNSNTYTNALINLECFLVYLSQEYHVNDIVKFYVAKFKTKYKSKIWFTSPKSKVNDFFDLVGEFKDNFKSVYKGDSEQR
VVFQGQVGYFDGSIFRKVDSASNIAEIAQNFLEGLNNANCGK
>Mature_442_residues
MLSKHLDYFAKIGQSYCYEKQNFNKRLPEMQNRFNSRLEQNTKIVNNGKKFIFKKLHFQILGENSKKTDPNLKEISDLRL
SSHIGRKEIEYQRLLKVSWLLEKKYQKYLKSQKLETYQIKDIIEVVNSMLAKNNYKTVAKSTIQKDLKKLIKMGLVANYS
KSFGKNNGGFSLYKPNTNIWQHRVEIIRGYFENEIRDYTKDKRIVTVFKKEIDEHTFPKVNSSNNTPSNTTLIYNIKDSN
KIKNSIENFSIKNNKNFTENNQKKEKIEKQKIEKENLIEKKEKKEKMKFTYKTSFAEYQETKLTTKYKISPNHFVDLYRF
SNNSNTYTNALINLECFLVYLSQEYHVNDIVKFYVAKFKTKYKSKIWFTSPKSKVNDFFDLVGEFKDNFKSVYKGDSEQR
VVFQGQVGYFDGSIFRKVDSASNIAEIAQNFLEGLNNANCGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52228; Mature: 52228

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA