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The map label for this gene is dnaB [H]

Identifier: 117621830

GI number: 117621830

Start: 25091

End: 26446

Strand: Reverse

Name: dnaB [H]

Synonym: BAPKO_4530

Alternate gene names: 117621830

Gene position: 26446-25091 (Counterclockwise)

Preceding gene: 117621831

Following gene: 117621827

Centisome position: 92.69

GC content: 37.17

Gene sequence:

>1356_bases
ATGCAAATTGCGGTAAATAACAAAAATATTGGCAAGAAATATATTCTTTCGAATCGGGATTCAGAAAATATTGTGATAGG
CAGTCTTTTGAACAATACGGCCCAAATTGAAAAAGTTTTGCTATACTTGAGTCCGGAAGATTTTGATTTTGACGTAAACA
GAAAGATTTTTTCTTGTATGGTAAATTTACATCAAAAAGGTGTTTCGATTGACCCGATCATAGTGCTTGACGCGCTTGTA
AAAAATAACAAGTCTAATAGGCCTTTTTTCGATTTTGAAGTACGTGAATATGTGGACACTATCTCAACATATGCTACGGT
CGACGCCGTAGTAGAAACTCATTGTAACATCATTAGAGACTGCAGTATGAGACGTACAGTCATTGGGATGGTTGATGATA
TAGCCCGCCTTGCTACAGATGGATCAGTAGGTTTGGAGACTTTGTTTGACAATGTGCAAAATAGAGTAAATTTGCTCGAA
AATAGATACATAAGTAAAAGTTCGTCATCTAGTGCTGCAGGTGACATTGTTCGAGCCATAAGTTCTAATATCCAGAATAG
AAATTTTACAGAAAATAGTTACATTAGTAGCGGTTTTGTTGGCCTTGACAAAATAATTAAAGGCTTTAAAAAATCTGATT
TGGTGATAGTTGGGGCGCGGCCTAGTGTTGGTAAAACTGCTTTTGCACTCAATATTGTAAACAATTTGTGTCTCAATCAA
GGTAGTAGCGTTGGATTTTTTACGCTTGAGATGTCTAGTGAGGCTATTATGGTAAGACTTATTGCTATGAATTCGGGGGT
CGAATACGACAAGATTTTCAACAATATCTTGATGGACGAAAATGAACGTCTCAGGTGTGTTAAAGCGTGTTCTAAAATCG
AAAATTTCAAAATGCGTATTGACGAAACATGTAGAATAGACATACACGAACTTAAGTTCAAGGCCAGGAAAATGAAGAAG
GATTATGGTGTTGAGATTATTTTGCTTGACTATATTGGTTTGATTTCTGTTGCACAAAATAATACGCCCCGTTATGAGCA
AGTTGCGTTTTTAAGCAAAAATTTACGTGAACTTGCCCTTGAGCTAAAAATACCCATAATAGTTCTATCCCAACTTACTA
GAAGCGCTGAAGGTAAAGAGCCCAATTTGGCAAATTTACGGGAATCGGGGGCTTTAGAACAGGACGCAGACACCGTAATT
TTTTTGCACAGAGAAAATGAAGGACTCCAGGACGATTGTGAAGAAGTGCGTAAAGTAAAGGTCATTGTAGCCAAAAATAG
AAATGGGCACACTGGTGTTGTAACTATGGATTTTGTTTCTAGATACACCAGATTTGTGGATTTGGGTGGTGGTTGA

Upstream 100 bases:

>100_bases
CAAGGTCAGGTTGGGTATTTTGATGGTTCAATTTTTCGTAAAGTGGACAGTGCTAGCAATATTGCAGAAATTGCACAAAA
TTTTTTGGAGGGTTTGAACA

Downstream 100 bases:

>100_bases
GAATAATTTAGAATTACTACCCATAATAATCCTTAATTTTGGTGTAACATGTTTGTATGGGGTAATTGATTTTATAATAG
GCTAAAAGATTATTGTCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MQIAVNNKNIGKKYILSNRDSENIVIGSLLNNTAQIEKVLLYLSPEDFDFDVNRKIFSCMVNLHQKGVSIDPIIVLDALV
KNNKSNRPFFDFEVREYVDTISTYATVDAVVETHCNIIRDCSMRRTVIGMVDDIARLATDGSVGLETLFDNVQNRVNLLE
NRYISKSSSSSAAGDIVRAISSNIQNRNFTENSYISSGFVGLDKIIKGFKKSDLVIVGARPSVGKTAFALNIVNNLCLNQ
GSSVGFFTLEMSSEAIMVRLIAMNSGVEYDKIFNNILMDENERLRCVKACSKIENFKMRIDETCRIDIHELKFKARKMKK
DYGVEIILLDYIGLISVAQNNTPRYEQVAFLSKNLRELALELKIPIIVLSQLTRSAEGKEPNLANLRESGALEQDADTVI
FLHRENEGLQDDCEEVRKVKVIVAKNRNGHTGVVTMDFVSRYTRFVDLGGG

Sequences:

>Translated_451_residues
MQIAVNNKNIGKKYILSNRDSENIVIGSLLNNTAQIEKVLLYLSPEDFDFDVNRKIFSCMVNLHQKGVSIDPIIVLDALV
KNNKSNRPFFDFEVREYVDTISTYATVDAVVETHCNIIRDCSMRRTVIGMVDDIARLATDGSVGLETLFDNVQNRVNLLE
NRYISKSSSSSAAGDIVRAISSNIQNRNFTENSYISSGFVGLDKIIKGFKKSDLVIVGARPSVGKTAFALNIVNNLCLNQ
GSSVGFFTLEMSSEAIMVRLIAMNSGVEYDKIFNNILMDENERLRCVKACSKIENFKMRIDETCRIDIHELKFKARKMKK
DYGVEIILLDYIGLISVAQNNTPRYEQVAFLSKNLRELALELKIPIIVLSQLTRSAEGKEPNLANLRESGALEQDADTVI
FLHRENEGLQDDCEEVRKVKVIVAKNRNGHTGVVTMDFVSRYTRFVDLGGG
>Mature_451_residues
MQIAVNNKNIGKKYILSNRDSENIVIGSLLNNTAQIEKVLLYLSPEDFDFDVNRKIFSCMVNLHQKGVSIDPIIVLDALV
KNNKSNRPFFDFEVREYVDTISTYATVDAVVETHCNIIRDCSMRRTVIGMVDDIARLATDGSVGLETLFDNVQNRVNLLE
NRYISKSSSSSAAGDIVRAISSNIQNRNFTENSYISSGFVGLDKIIKGFKKSDLVIVGARPSVGKTAFALNIVNNLCLNQ
GSSVGFFTLEMSSEAIMVRLIAMNSGVEYDKIFNNILMDENERLRCVKACSKIENFKMRIDETCRIDIHELKFKARKMKK
DYGVEIILLDYIGLISVAQNNTPRYEQVAFLSKNLRELALELKIPIIVLSQLTRSAEGKEPNLANLRESGALEQDADTVI
FLHRENEGLQDDCEEVRKVKVIVAKNRNGHTGVVTMDFVSRYTRFVDLGGG

Specific function: Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity [H]

COG id: COG0305

COG function: function code L; Replicative DNA helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SF4 helicase domain [H]

Homologues:

Organism=Escherichia coli, GI1790486, Length=440, Percent_Identity=30, Blast_Score=190, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007692
- InterPro:   IPR007694
- InterPro:   IPR007693
- InterPro:   IPR016136 [H]

Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 50610; Mature: 50610

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIAVNNKNIGKKYILSNRDSENIVIGSLLNNTAQIEKVLLYLSPEDFDFDVNRKIFSCM
CEEEECCCCCCCEEEECCCCCCCEEEEHHHCCHHHHHHEEEEECCCCCCCCCHHHHHHHH
VNLHQKGVSIDPIIVLDALVKNNKSNRPFFDFEVREYVDTISTYATVDAVVETHCNIIRD
HHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CSMRRTVIGMVDDIARLATDGSVGLETLFDNVQNRVNLLENRYISKSSSSSAAGDIVRAI
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
SSNIQNRNFTENSYISSGFVGLDKIIKGFKKSDLVIVGARPSVGKTAFALNIVNNLCLNQ
HHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
GSSVGFFTLEMSSEAIMVRLIAMNSGVEYDKIFNNILMDENERLRCVKACSKIENFKMRI
CCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEE
DETCRIDIHELKFKARKMKKDYGVEIILLDYIGLISVAQNNTPRYEQVAFLSKNLRELAL
CCEEEEEHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ELKIPIIVLSQLTRSAEGKEPNLANLRESGALEQDADTVIFLHRENEGLQDDCEEVRKVK
HHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHEE
VIVAKNRNGHTGVVTMDFVSRYTRFVDLGGG
EEEEECCCCCCEEEEHHHHHHHHHHEECCCC
>Mature Secondary Structure
MQIAVNNKNIGKKYILSNRDSENIVIGSLLNNTAQIEKVLLYLSPEDFDFDVNRKIFSCM
CEEEECCCCCCCEEEECCCCCCCEEEEHHHCCHHHHHHEEEEECCCCCCCCCHHHHHHHH
VNLHQKGVSIDPIIVLDALVKNNKSNRPFFDFEVREYVDTISTYATVDAVVETHCNIIRD
HHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CSMRRTVIGMVDDIARLATDGSVGLETLFDNVQNRVNLLENRYISKSSSSSAAGDIVRAI
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
SSNIQNRNFTENSYISSGFVGLDKIIKGFKKSDLVIVGARPSVGKTAFALNIVNNLCLNQ
HHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
GSSVGFFTLEMSSEAIMVRLIAMNSGVEYDKIFNNILMDENERLRCVKACSKIENFKMRI
CCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEE
DETCRIDIHELKFKARKMKKDYGVEIILLDYIGLISVAQNNTPRYEQVAFLSKNLRELAL
CCEEEEEHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ELKIPIIVLSQLTRSAEGKEPNLANLRESGALEQDADTVIFLHRENEGLQDDCEEVRKVK
HHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHEE
VIVAKNRNGHTGVVTMDFVSRYTRFVDLGGG
EEEEECCCCCCEEEEHHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]