Definition | Borrelia afzelii PKo plasmid lp60-2, complete sequence. |
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Accession | NC_008565 |
Length | 59,804 |
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The map label for this gene is 117621660
Identifier: 117621660
GI number: 117621660
Start: 13613
End: 14179
Strand: Direct
Name: 117621660
Synonym: BAPKO_2513
Alternate gene names: NA
Gene position: 13613-14179 (Clockwise)
Preceding gene: 117621659
Following gene: 117621661
Centisome position: 22.76
GC content: 23.46
Gene sequence:
>567_bases TTGAGTAGATTACTTGAAAAACTAAAACAAAAAAAGGCTTTGATAAAGATTAGCAACATTTCAATTAAAAAAGATACCTT TAGTAAAATAGAAGAAATAGACGGCAAAAAAGTATACTACACAAAAATATTTAAACATTTAATTGGCTTCAGAGTTACTA ACAAAGGACAAAGACTTAGACTTGTTTTTCAAGAATTTAATAATCTTAATAAAGATTATTACTTTTTTAACCTTTTTGCA TTAGAAGAAAATGATAAATTTTTAGGAATAAAATATGGATGGGATCGTCTTAAAAACCCTTTATTTCTTAAAAAAGAAAA TAATAAAATTTATGCAATAAAAAAACTATATTACATAGAGTTTAGGTTTAAAAAAGGATCTATTAAGTCCTATATATTGT CTTTAAGAACTTTGTTAAGAAAAAAAGAAAAAGAAGCCACCGAGTACTATCAGTTTACGTTAAATCATTTAGAAAAAATG GAAAGCAAGGTATATAGGTTTTACAATAAAAAATTACCAGACGGAGGAATTTTAAAAAAATGGATATTAAAAAATCAGAT ATCATAA
Upstream 100 bases:
>100_bases GTTACTAAATGGAAAGAAAATAAAATAAATAACTTTTCAGGACATGCAAGTATAATAGCTAATAATATTTTAACCAATAT TTTGACAAAAGGATTAAAAT
Downstream 100 bases:
>100_bases CAATGGCTTCAATCAAGGGAGGAGTTGGAAAAAGTGCACTTTCTATACTTTTTTCTTATGTTTTAAAAGAATTGGGGAAA AAAGTACTATTAATTGATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MSRLLEKLKQKKALIKISNISIKKDTFSKIEEIDGKKVYYTKIFKHLIGFRVTNKGQRLRLVFQEFNNLNKDYYFFNLFA LEENDKFLGIKYGWDRLKNPLFLKKENNKIYAIKKLYYIEFRFKKGSIKSYILSLRTLLRKKEKEATEYYQFTLNHLEKM ESKVYRFYNKKLPDGGILKKWILKNQIS
Sequences:
>Translated_188_residues MSRLLEKLKQKKALIKISNISIKKDTFSKIEEIDGKKVYYTKIFKHLIGFRVTNKGQRLRLVFQEFNNLNKDYYFFNLFA LEENDKFLGIKYGWDRLKNPLFLKKENNKIYAIKKLYYIEFRFKKGSIKSYILSLRTLLRKKEKEATEYYQFTLNHLEKM ESKVYRFYNKKLPDGGILKKWILKNQIS >Mature_187_residues SRLLEKLKQKKALIKISNISIKKDTFSKIEEIDGKKVYYTKIFKHLIGFRVTNKGQRLRLVFQEFNNLNKDYYFFNLFAL EENDKFLGIKYGWDRLKNPLFLKKENNKIYAIKKLYYIEFRFKKGSIKSYILSLRTLLRKKEKEATEYYQFTLNHLEKME SKVYRFYNKKLPDGGILKKWILKNQIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22855; Mature: 22724
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLLEKLKQKKALIKISNISIKKDTFSKIEEIDGKKVYYTKIFKHLIGFRVTNKGQRLR CHHHHHHHHHHHHEEEEECCEECHHHHHHHHHCCCCEEHHHHHHHHHHCEEECCCCCHHH LVFQEFNNLNKDYYFFNLFALEENDKFLGIKYGWDRLKNPLFLKKENNKIYAIKKLYYIE HHHHHHCCCCCCEEEEEEEEEECCCCEEEEEECHHHHCCCEEEEECCCEEEEEEEEEEEE FRFKKGSIKSYILSLRTLLRKKEKEATEYYQFTLNHLEKMESKVYRFYNKKLPDGGILKK EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH WILKNQIS HHHHHCCC >Mature Secondary Structure SRLLEKLKQKKALIKISNISIKKDTFSKIEEIDGKKVYYTKIFKHLIGFRVTNKGQRLR HHHHHHHHHHHHEEEEECCEECHHHHHHHHHCCCCEEHHHHHHHHHHCEEECCCCCHHH LVFQEFNNLNKDYYFFNLFALEENDKFLGIKYGWDRLKNPLFLKKENNKIYAIKKLYYIE HHHHHHCCCCCCEEEEEEEEEECCCCEEEEEECHHHHCCCEEEEECCCEEEEEEEEEEEE FRFKKGSIKSYILSLRTLLRKKEKEATEYYQFTLNHLEKMESKVYRFYNKKLPDGGILKK EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH WILKNQIS HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA