Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689998
Identifier: 116689998
GI number: 116689998
Start: 2195742
End: 2196737
Strand: Direct
Name: 116689998
Synonym: Bcen2424_1977
Alternate gene names: NA
Gene position: 2195742-2196737 (Clockwise)
Preceding gene: 116689997
Following gene: 116689999
Centisome position: 63.03
GC content: 74.4
Gene sequence:
>996_bases ATGACCGCTTCTTCCTCCGCTTTCCCGCTGCCCGGCGTGCCGGCCGCCGATCATGCCGCGCTCGTCGCGCGCCTCGCCGC AGCCGACGCATCGGTGCGCCGCATCGCGCTGCTCGAACTCGCCGATCTCGAAGCGCCCGAACTCGTGCCGTCGTTCATCG CGGCGCTGCGCGACGACCCGTCGGCCGACGTGCGCAGCGAGGCCGCGCGCGTGCTCGACGCATGGGAGCAGCCCGAGGTC GTCGACGCGCTGTGCCACGCGCTGCTCGATCCGGACAACGGCGTGCGCGCCACCGCCGCGCAAAGCCTGTCCGAACTGAA GGACGCGGCATCGGGCGCCGTGCTGTGCCGCTGGGCCGACCGGTCCGAGCCGTTCGTGCGCGGCGCCGTGCTGCGCGGCT TGCGCGAGTTGCGCGACCCCGACGCGTTCGCGCCCGCGCTGCGCGCGCTCGACGCGAGCGCCGCTGCCGTCCGAGCCGAG GCGGTCGTCGTGCTCGGCTGGCTCAAGGACGGCCGCGCGCTGCCGCCGCTCGCCCGCGTCGCGACCGCGGACGCCGACGC GGACGTGCGGCGCGCCGCGGTCGGCGCAATCGGGTTTGCGGCGGCGGGCGATACCGCCGTCGTCACCGCGTTGCTCGCGG CGCTGCGTGACGCCGAATGGCAGGTGCGCGAAGAAGCGGCTGCCACGCTCGGCAAGCTGCGCATCGCCGCTGCGCGCGAC CCGCTCGTCGCCGCGCTCGACGACGACTACTGGCAAGTGCGCGTGCGTGCCGTCCGCGCGCTGGGCCAATTGCGCGATGC GGCCGCGGCGTCGGCCGTCGTCGCGCTGCTCTCGCATACGATCAGCAACCTGCGCAAGGAAGCCGCGCTCGCGCTCGGCG AATTGCTCGACCGGGCGACGCTGCGGGCGCTACACGACGCACTCGACGATCGCGACCCCGAAGTCCGCAAGGCCGTGCGG ATCGCGATCGGACAGATCGACGAGGCGTCGCGATGA
Upstream 100 bases:
>100_bases CGAGCCCGCGTTCGTCGACATCAAGCGCCGCTGCCTCGCGCTGTTGCGCGATGCCGCCTGAGCGCACGTGCCCGCCCATT CACCGCACCGACTCTTTCCC
Downstream 100 bases:
>100_bases TCGCGCCGACCGAAATCGCACTCGATCACCCGGCACGCGCACTGACGCTGCGCTGGCCCGACGGCGCGACGCAACGTATC GGCTATGCGCAGTTGCGCAG
Product: heat domain-containing protein
Products: NA
Alternate protein names: HEAT Repeat-Containing Protein; Phycobiliprotein; HEAT Repeat; HEAT Repeat Protein; PBS Lyase HEAT Domain Protein Repeat-Containing Protein; HEAT Domain Containing Protein
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MTASSSAFPLPGVPAADHAALVARLAAADASVRRIALLELADLEAPELVPSFIAALRDDPSADVRSEAARVLDAWEQPEV VDALCHALLDPDNGVRATAAQSLSELKDAASGAVLCRWADRSEPFVRGAVLRGLRELRDPDAFAPALRALDASAAAVRAE AVVVLGWLKDGRALPPLARVATADADADVRRAAVGAIGFAAAGDTAVVTALLAALRDAEWQVREEAAATLGKLRIAAARD PLVAALDDDYWQVRVRAVRALGQLRDAAAASAVVALLSHTISNLRKEAALALGELLDRATLRALHDALDDRDPEVRKAVR IAIGQIDEASR
Sequences:
>Translated_331_residues MTASSSAFPLPGVPAADHAALVARLAAADASVRRIALLELADLEAPELVPSFIAALRDDPSADVRSEAARVLDAWEQPEV VDALCHALLDPDNGVRATAAQSLSELKDAASGAVLCRWADRSEPFVRGAVLRGLRELRDPDAFAPALRALDASAAAVRAE AVVVLGWLKDGRALPPLARVATADADADVRRAAVGAIGFAAAGDTAVVTALLAALRDAEWQVREEAAATLGKLRIAAARD PLVAALDDDYWQVRVRAVRALGQLRDAAAASAVVALLSHTISNLRKEAALALGELLDRATLRALHDALDDRDPEVRKAVR IAIGQIDEASR >Mature_330_residues TASSSAFPLPGVPAADHAALVARLAAADASVRRIALLELADLEAPELVPSFIAALRDDPSADVRSEAARVLDAWEQPEVV DALCHALLDPDNGVRATAAQSLSELKDAASGAVLCRWADRSEPFVRGAVLRGLRELRDPDAFAPALRALDASAAAVRAEA VVVLGWLKDGRALPPLARVATADADADVRRAAVGAIGFAAAGDTAVVTALLAALRDAEWQVREEAAATLGKLRIAAARDP LVAALDDDYWQVRVRAVRALGQLRDAAAASAVVALLSHTISNLRKEAALALGELLDRATLRALHDALDDRDPEVRKAVRI AIGQIDEASR
Specific function: Unknown
COG id: COG1413
COG function: function code C; FOG: HEAT repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34705; Mature: 34573
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASSSAFPLPGVPAADHAALVARLAAADASVRRIALLELADLEAPELVPSFIAALRDDP CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC SADVRSEAARVLDAWEQPEVVDALCHALLDPDNGVRATAAQSLSELKDAASGAVLCRWAD CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC RSEPFVRGAVLRGLRELRDPDAFAPALRALDASAAAVRAEAVVVLGWLKDGRALPPLARV CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHH ATADADADVRRAAVGAIGFAAAGDTAVVTALLAALRDAEWQVREEAAATLGKLRIAAARD HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC PLVAALDDDYWQVRVRAVRALGQLRDAAAASAVVALLSHTISNLRKEAALALGELLDRAT CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRALHDALDDRDPEVRKAVRIAIGQIDEASR HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TASSSAFPLPGVPAADHAALVARLAAADASVRRIALLELADLEAPELVPSFIAALRDDP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC SADVRSEAARVLDAWEQPEVVDALCHALLDPDNGVRATAAQSLSELKDAASGAVLCRWAD CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC RSEPFVRGAVLRGLRELRDPDAFAPALRALDASAAAVRAEAVVVLGWLKDGRALPPLARV CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHH ATADADADVRRAAVGAIGFAAAGDTAVVTALLAALRDAEWQVREEAAATLGKLRIAAARD HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC PLVAALDDDYWQVRVRAVRALGQLRDAAAASAVVALLSHTISNLRKEAALALGELLDRAT CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRALHDALDDRDPEVRKAVRIAIGQIDEASR HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA