Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689768
Identifier: 116689768
GI number: 116689768
Start: 1943373
End: 1944179
Strand: Direct
Name: 116689768
Synonym: Bcen2424_1747
Alternate gene names: NA
Gene position: 1943373-1944179 (Clockwise)
Preceding gene: 116689767
Following gene: 116689773
Centisome position: 55.78
GC content: 73.11
Gene sequence:
>807_bases ATGCTGATTTCCCTCGTACTCGGCGGCTTCGTCGGCGCCGTGCTCGGTTTGACCGGCGCCGGCGGCGGCATTCTTGCGGT GCCCGCGCTCGTCGTCGGGATGAGCTGGCCGATGCAGCAGGCCACGCCGGTCGCGCTCATCGCGGTGGCGGGCAGCGCCG CGCTCGGCGCGCTCGAAGGCTTTCGCCGCGGGCTCGTGCGCTACCGCGCGGCGCTGCTGATGGCGGTGGCCGGCGTGCCG CTGACCACGCTTGGCGTGCGGCTCGCGCACGTGCTGCCGCAGCGCCTGCTGCTCACGCTGTTCGCGCTGACGATGCTGGT CGTCGCCGCTCGCCTGTTGCGGCAGGCGCTGCGGCGGCAGGCGACCGATACGGACACGTCGCCGCTGTGCGTCGGCCGCG TGAATCCCGATACGGGCCGGCTCGTGTGGTCGTGGCCCGTAGGCATCGCGCTGGCGTCGACCGGCGCGGTCACGGGCTTG ATGACGGGGCTGCTCGGCGTCGGCGGCGGTTTCGTGATCGTGCCGATGCTGCGCAAGTTCACGAACGTGTCGATGCATGG GGTGGTCGCGACGTCGCTGATGGTGATCGCGCTGGTCGGCACCGGCGGCGTGCTCGCGACGCTCGTGTCGGGCACGCGCG CGCCACTCGACGTGACGCTGTGGTTCACCGTCGCGACCGCGCTCGGCATGGCCGCCGGCCGCGGTGCGTCGCGCCACCTC GCCGCGCGGCATGTGCAGGCCGGTTTTGCGGCCGTGCTCGTGTGCGTCGCGCTCGGCTTGCTGGCCAAGGCGGCGTTCGG CGCGTGA
Upstream 100 bases:
>100_bases GGAGCGCGTGCTGCCGCCGCTCTACTGGAAGGCGATGCTCAAGGGCCGCGAATGGCTCGCGAAGCCCGCGATCGCGCGTT GACCGGAGCCGGATGACGTC
Downstream 100 bases:
>100_bases ACGACGGCGACGCGCCGGCGATCGTTGCGCGCCGCCAAAACGAAACGCCCGGCCCGACTCGTCGTCGGCACCGGGCGTTT TTCATGATGGCCGCAATCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MLISLVLGGFVGAVLGLTGAGGGILAVPALVVGMSWPMQQATPVALIAVAGSAALGALEGFRRGLVRYRAALLMAVAGVP LTTLGVRLAHVLPQRLLLTLFALTMLVVAARLLRQALRRQATDTDTSPLCVGRVNPDTGRLVWSWPVGIALASTGAVTGL MTGLLGVGGGFVIVPMLRKFTNVSMHGVVATSLMVIALVGTGGVLATLVSGTRAPLDVTLWFTVATALGMAAGRGASRHL AARHVQAGFAAVLVCVALGLLAKAAFGA
Sequences:
>Translated_268_residues MLISLVLGGFVGAVLGLTGAGGGILAVPALVVGMSWPMQQATPVALIAVAGSAALGALEGFRRGLVRYRAALLMAVAGVP LTTLGVRLAHVLPQRLLLTLFALTMLVVAARLLRQALRRQATDTDTSPLCVGRVNPDTGRLVWSWPVGIALASTGAVTGL MTGLLGVGGGFVIVPMLRKFTNVSMHGVVATSLMVIALVGTGGVLATLVSGTRAPLDVTLWFTVATALGMAAGRGASRHL AARHVQAGFAAVLVCVALGLLAKAAFGA >Mature_268_residues MLISLVLGGFVGAVLGLTGAGGGILAVPALVVGMSWPMQQATPVALIAVAGSAALGALEGFRRGLVRYRAALLMAVAGVP LTTLGVRLAHVLPQRLLLTLFALTMLVVAARLLRQALRRQATDTDTSPLCVGRVNPDTGRLVWSWPVGIALASTGAVTGL MTGLLGVGGGFVIVPMLRKFTNVSMHGVVATSLMVIALVGTGGVLATLVSGTRAPLDVTLWFTVATALGMAAGRGASRHL AARHVQAGFAAVLVCVALGLLAKAAFGA
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27084; Mature: 27084
Theoretical pI: Translated: 12.45; Mature: 12.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLISLVLGGFVGAVLGLTGAGGGILAVPALVVGMSWPMQQATPVALIAVAGSAALGALEG CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHH FRRGLVRYRAALLMAVAGVPLTTLGVRLAHVLPQRLLLTLFALTMLVVAARLLRQALRRQ HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATDTDTSPLCVGRVNPDTGRLVWSWPVGIALASTGAVTGLMTGLLGVGGGFVIVPMLRKF CCCCCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH TNVSMHGVVATSLMVIALVGTGGVLATLVSGTRAPLDVTLWFTVATALGMAAGRGASRHL HCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH AARHVQAGFAAVLVCVALGLLAKAAFGA HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLISLVLGGFVGAVLGLTGAGGGILAVPALVVGMSWPMQQATPVALIAVAGSAALGALEG CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHH FRRGLVRYRAALLMAVAGVPLTTLGVRLAHVLPQRLLLTLFALTMLVVAARLLRQALRRQ HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATDTDTSPLCVGRVNPDTGRLVWSWPVGIALASTGAVTGLMTGLLGVGGGFVIVPMLRKF CCCCCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH TNVSMHGVVATSLMVIALVGTGGVLATLVSGTRAPLDVTLWFTVATALGMAAGRGASRHL HCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH AARHVQAGFAAVLVCVALGLLAKAAFGA HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA