Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is 116689764

Identifier: 116689764

GI number: 116689764

Start: 1938527

End: 1939096

Strand: Reverse

Name: 116689764

Synonym: Bcen2424_1743

Alternate gene names: NA

Gene position: 1939096-1938527 (Counterclockwise)

Preceding gene: 116689765

Following gene: 116689759

Centisome position: 55.66

GC content: 64.74

Gene sequence:

>570_bases
TTGCCGATAATGGCGCGTTCGATTTCAGCGCTTTCGCCCCCGCCGATGAAAAGACATGCCCTTTCGCGTTGCCTGTTGCT
CGCAGTCGCAGCGCTGGCCAGCCCGGCGCACGCCGCCGACTACGCGTGGACCGATGCGGTCGGTGCGCACGCGGTGACGC
TCGCCAGAACCGCGTCCGGCGACGACGTCGAACTCAAGGTGTCCGCGACGCTCGACGGCCACCCCGACTGGACGGTGCGC
GACTACGTGAAGGATTGCCCGGTCGACGTGATTCTCGATGTCGTGCCGAAGTCGATCGAAATGCGCGACCTGCTCGGCAA
CGGCCGCAAGCAGTTCCTGTTCGCGTACAAGATCGGTTGCCGCGGCGACGTGAGCGCCGATCAGGTGAAGTACTTTCTGA
TCGACGCGGGCACCAAATACGTGCTGCGCGGCGAGGAAACCGTCACGGTCAACGGCAAGTTCGTCGACGGCGGCGCAGCG
CCCGTGCCGAATGCGGACCTGAAGGCGCAGCCCGCGTTTCTGCGCTACATGATGAAGCGCTGGCGCGCGATCAGCATGCG
TAACGACTAG

Upstream 100 bases:

>100_bases
TGAGCGAGCGGACACTGTACCGGCGGATGAAGGCGCTAGGCCTCGGCTCGCGCGAGCGCTGAACGGGCGGGTCGCGCGCG
GCTGGCGGCGGCACGCGGCT

Downstream 100 bases:

>100_bases
GCGGGCGCCGGGCCGTCGTGCGCGCGATACCGGCTGCCCATGGTGAAACGGGCGGCACACGGGAACCTCGCCTGCCGCCC
GCCCGTCATGCGATCAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MPIMARSISALSPPPMKRHALSRCLLLAVAALASPAHAADYAWTDAVGAHAVTLARTASGDDVELKVSATLDGHPDWTVR
DYVKDCPVDVILDVVPKSIEMRDLLGNGRKQFLFAYKIGCRGDVSADQVKYFLIDAGTKYVLRGEETVTVNGKFVDGGAA
PVPNADLKAQPAFLRYMMKRWRAISMRND

Sequences:

>Translated_189_residues
MPIMARSISALSPPPMKRHALSRCLLLAVAALASPAHAADYAWTDAVGAHAVTLARTASGDDVELKVSATLDGHPDWTVR
DYVKDCPVDVILDVVPKSIEMRDLLGNGRKQFLFAYKIGCRGDVSADQVKYFLIDAGTKYVLRGEETVTVNGKFVDGGAA
PVPNADLKAQPAFLRYMMKRWRAISMRND
>Mature_188_residues
PIMARSISALSPPPMKRHALSRCLLLAVAALASPAHAADYAWTDAVGAHAVTLARTASGDDVELKVSATLDGHPDWTVRD
YVKDCPVDVILDVVPKSIEMRDLLGNGRKQFLFAYKIGCRGDVSADQVKYFLIDAGTKYVLRGEETVTVNGKFVDGGAAP
VPNADLKAQPAFLRYMMKRWRAISMRND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20603; Mature: 20472

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIMARSISALSPPPMKRHALSRCLLLAVAALASPAHAADYAWTDAVGAHAVTLARTASG
CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEECCCC
DDVELKVSATLDGHPDWTVRDYVKDCPVDVILDVVPKSIEMRDLLGNGRKQFLFAYKIGC
CCEEEEEEEEECCCCCCHHHHHHHHCCHHHHHHHCCCCCHHHHHHCCCCEEEEEEEEECC
RGDVSADQVKYFLIDAGTKYVLRGEETVTVNGKFVDGGAAPVPNADLKAQPAFLRYMMKR
CCCCCHHHEEEEEEECCCEEEEECCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHHH
WRAISMRND
HHHHCCCCC
>Mature Secondary Structure 
PIMARSISALSPPPMKRHALSRCLLLAVAALASPAHAADYAWTDAVGAHAVTLARTASG
CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEEEECCCC
DDVELKVSATLDGHPDWTVRDYVKDCPVDVILDVVPKSIEMRDLLGNGRKQFLFAYKIGC
CCEEEEEEEEECCCCCCHHHHHHHHCCHHHHHHHCCCCCHHHHHHCCCCEEEEEEEEECC
RGDVSADQVKYFLIDAGTKYVLRGEETVTVNGKFVDGGAAPVPNADLKAQPAFLRYMMKR
CCCCCHHHEEEEEEECCCEEEEECCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHHH
WRAISMRND
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA