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The map label for this gene is nolA [H]

Identifier: 116689763

GI number: 116689763

Start: 1937405

End: 1938433

Strand: Direct

Name: nolA [H]

Synonym: Bcen2424_1742

Alternate gene names: 116689763

Gene position: 1937405-1938433 (Clockwise)

Preceding gene: 116689762

Following gene: 116689766

Centisome position: 55.61

GC content: 66.47

Gene sequence:

>1029_bases
ATGCGGCTGAAAGTGGGAGACCTGGCGAAACGCAGCGGGCTGACCGTCCGCACGCTTCATCACTATCACGCAATCGGTTT
GCTGACGCCTTCGGCGCGCGCCGACAACGGCTACCGGCTGTACGACCGCGACGACATCGCCCGGCTCCACCAGATCCAGG
CCCTGCGTCGCTTCGGACTGTCGCTCGCCGAAATCGGCGACTACCTGAACCAGCCCGGTACCCCGCTCGTCGATCTCGTC
GCCAGGCAGATCGCGTCGCTCGACCGCCAGCTCGCGCAAACCGCGCAGCTGCGCGAGCGGCTCGCGAGCCTGCATGCGCA
GCTCGCGGCGGGCACCGAGCCGGAACTGGCCGATTGGCTCACCACACTGGAGTTGATGACCGTGTACGACAAATATTTTT
CCGAGGAAGAACTCGCGCGCCTGCCGATGTACCAGAAGAGCCAGGCGGGCGACGCGGAATGGATCGCGCTCGTTGCCGAA
GTGCGCGCGCTGCACGAGGCGGGCGTGCCCGCCGAGGACGAGCGCGTCCGTGCGCTCGCCGCGCGCTGGATGGCGCAACT
GGTGCGCGACACGAACAACGATCCGCGGTTGCTCGCGAAGCTGAACCTGATGCACGAGCATGAACCGTCGATGCAGTCGA
AGATCGGCATTTCGACCGCGTTGCGCGACTATGTGCTGCGCGCTTCGGCGGAAACGAAGATGCGGCTCTTCGAGAAGTAT
CTGGCGCCCGACGAGATCCGCTTCATGCGGGCGCACTACGGCGAACGCTCGATGGAATGGCCGCAACTGATGGCCGACGT
ACGCGACGCGATCGATGCGGGCGCGCAGCCCGATTCGCCGCAAGGCCGCGCGCTCGCGCAGCGCTGGCTCGAGCTGTTCT
GCAGCTACGCGGGCCACGATCCGGCCACGCACGCGAAATTCCGCCACGCGCTGATGAACGAGCCGGCGCTGACGAAGGAT
TCGTGGACCGACGACACGCTGCTCGGTTTCGTGCGCGAAGCGATGGCGCAGTTGGCGCCTGCGCGTTGA

Upstream 100 bases:

>100_bases
TGCGGATTCCCGCCACGCGCGTCCGATCGCCGCTCTTTCGCTTGACCCTCACGTAGCGTAACGTTCGAGACTCCAGTGTG
CGCACCGAACGGAGGAACGA

Downstream 100 bases:

>100_bases
TCGCATGACGGGCGGGCGGCAGGCGAGGTTCCCGTGTGCCGCCCGTTTCACCATGGGCAGCCGGTATCGCGCGCACGACG
GCCCGGCGCCCGCCTAGTCG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRLKVGDLAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRDDIARLHQIQALRRFGLSLAEIGDYLNQPGTPLVDLV
ARQIASLDRQLAQTAQLRERLASLHAQLAAGTEPELADWLTTLELMTVYDKYFSEEELARLPMYQKSQAGDAEWIALVAE
VRALHEAGVPAEDERVRALAARWMAQLVRDTNNDPRLLAKLNLMHEHEPSMQSKIGISTALRDYVLRASAETKMRLFEKY
LAPDEIRFMRAHYGERSMEWPQLMADVRDAIDAGAQPDSPQGRALAQRWLELFCSYAGHDPATHAKFRHALMNEPALTKD
SWTDDTLLGFVREAMAQLAPAR

Sequences:

>Translated_342_residues
MRLKVGDLAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRDDIARLHQIQALRRFGLSLAEIGDYLNQPGTPLVDLV
ARQIASLDRQLAQTAQLRERLASLHAQLAAGTEPELADWLTTLELMTVYDKYFSEEELARLPMYQKSQAGDAEWIALVAE
VRALHEAGVPAEDERVRALAARWMAQLVRDTNNDPRLLAKLNLMHEHEPSMQSKIGISTALRDYVLRASAETKMRLFEKY
LAPDEIRFMRAHYGERSMEWPQLMADVRDAIDAGAQPDSPQGRALAQRWLELFCSYAGHDPATHAKFRHALMNEPALTKD
SWTDDTLLGFVREAMAQLAPAR
>Mature_342_residues
MRLKVGDLAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRDDIARLHQIQALRRFGLSLAEIGDYLNQPGTPLVDLV
ARQIASLDRQLAQTAQLRERLASLHAQLAAGTEPELADWLTTLELMTVYDKYFSEEELARLPMYQKSQAGDAEWIALVAE
VRALHEAGVPAEDERVRALAARWMAQLVRDTNNDPRLLAKLNLMHEHEPSMQSKIGISTALRDYVLRASAETKMRLFEKY
LAPDEIRFMRAHYGERSMEWPQLMADVRDAIDAGAQPDSPQGRALAQRWLELFCSYAGHDPATHAKFRHALMNEPALTKD
SWTDDTLLGFVREAMAQLAPAR

Specific function: Involved in genotype-specific nodulation of soybeans [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 38674; Mature: 38674

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKVGDLAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRDDIARLHQIQALRRFGL
CCCCCHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHCC
SLAEIGDYLNQPGTPLVDLVARQIASLDRQLAQTAQLRERLASLHAQLAAGTEPELADWL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TTLELMTVYDKYFSEEELARLPMYQKSQAGDAEWIALVAEVRALHEAGVPAEDERVRALA
HHHHHHHHHHHHHCHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ARWMAQLVRDTNNDPRLLAKLNLMHEHEPSMQSKIGISTALRDYVLRASAETKMRLFEKY
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LAPDEIRFMRAHYGERSMEWPQLMADVRDAIDAGAQPDSPQGRALAQRWLELFCSYAGHD
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
PATHAKFRHALMNEPALTKDSWTDDTLLGFVREAMAQLAPAR
CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLKVGDLAKRSGLTVRTLHHYHAIGLLTPSARADNGYRLYDRDDIARLHQIQALRRFGL
CCCCCHHHHHHCCCCHHHHHHHHHHHEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHCC
SLAEIGDYLNQPGTPLVDLVARQIASLDRQLAQTAQLRERLASLHAQLAAGTEPELADWL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TTLELMTVYDKYFSEEELARLPMYQKSQAGDAEWIALVAEVRALHEAGVPAEDERVRALA
HHHHHHHHHHHHHCHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
ARWMAQLVRDTNNDPRLLAKLNLMHEHEPSMQSKIGISTALRDYVLRASAETKMRLFEKY
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
LAPDEIRFMRAHYGERSMEWPQLMADVRDAIDAGAQPDSPQGRALAQRWLELFCSYAGHD
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
PATHAKFRHALMNEPALTKDSWTDDTLLGFVREAMAQLAPAR
CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631662 [H]