Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689740
Identifier: 116689740
GI number: 116689740
Start: 1913000
End: 1913488
Strand: Reverse
Name: 116689740
Synonym: Bcen2424_1719
Alternate gene names: NA
Gene position: 1913488-1913000 (Counterclockwise)
Preceding gene: 116689742
Following gene: 116689739
Centisome position: 54.92
GC content: 62.17
Gene sequence:
>489_bases ATGCCGGTCTCAGCCACCCTGCAGGATTGCCTGCGCCAGAAGTCATCGCGGTACGAAGTCGTGTACCACCCCTATAGTCA TACGAGCATGGAGACGGCCGCCGCCGCGCATATTCCCGGCGATCGTCTCGCGAAAACCGTGCTTCTCGAGGACGCCGAAG GCTACGTCGCCGCTGTATTGCCGACGACGCACGCCGTGCGCCTGTCGGATCTCTGGGTGAAGACGGGGCGCCATCTCGTG CTCGCGCGGGAGGTCGAGTTGCGCGAGTTGTTCAAGGATTGCGACATGGGCGCGCTGCCGCCGGTCTGCATGGCGTACGG GATGAAGACGTTTCTCGAGGAACACCTCGCGCAGCAGCCGGAAGTCTATTTCGAGGCCGGCGATCATCAAGCGCTGATTC ACATGATGCAGGACGAATTCCTGATGCTGATGGAGACGGCCGAGCGCGCGCATTTCTCGCACCGGATGCAGGGGATGATG CTGTCCTGA
Upstream 100 bases:
>100_bases CGAGGGCATTTCCATTGGGCCGGAATGCGACCTATGCTGAACGAATCCGGAGCGAACGCCGTTCGCCCTATTCGTCCGAT TCGCCCAGACGAGGTGCGCC
Downstream 100 bases:
>100_bases GCGATGCGGGTCGTGTGTCGATGAAGCATGCGCGGGCATTTTCCCGCCGGGCTCGGTGAGGTGGGGATGCCCGTGCGTGC AGAGGGGCGGGCAACGAATT
Product: YbaK/prolyl-tRNA synthetase associated region
Products: NA
Alternate protein names: YbaK-Like Protein; YbaK/Prolyl-TRNA Synthetase Domain-Containing Protein; YbaK / Prolyl-TRNA Synthetases Associated Domain Protein; YbaK/Aminoacyl-TRNA Synthetase Associated Region
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MPVSATLQDCLRQKSSRYEVVYHPYSHTSMETAAAAHIPGDRLAKTVLLEDAEGYVAAVLPTTHAVRLSDLWVKTGRHLV LAREVELRELFKDCDMGALPPVCMAYGMKTFLEEHLAQQPEVYFEAGDHQALIHMMQDEFLMLMETAERAHFSHRMQGMM LS
Sequences:
>Translated_162_residues MPVSATLQDCLRQKSSRYEVVYHPYSHTSMETAAAAHIPGDRLAKTVLLEDAEGYVAAVLPTTHAVRLSDLWVKTGRHLV LAREVELRELFKDCDMGALPPVCMAYGMKTFLEEHLAQQPEVYFEAGDHQALIHMMQDEFLMLMETAERAHFSHRMQGMM LS >Mature_161_residues PVSATLQDCLRQKSSRYEVVYHPYSHTSMETAAAAHIPGDRLAKTVLLEDAEGYVAAVLPTTHAVRLSDLWVKTGRHLVL AREVELRELFKDCDMGALPPVCMAYGMKTFLEEHLAQQPEVYFEAGDHQALIHMMQDEFLMLMETAERAHFSHRMQGMML S
Specific function: Unknown
COG id: COG2606
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18377; Mature: 18246
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 7.4 %Met (Translated Protein) 9.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 6.8 %Met (Mature Protein) 8.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVSATLQDCLRQKSSRYEVVYHPYSHTSMETAAAAHIPGDRLAKTVLLEDAEGYVAAVL CCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEE PTTHAVRLSDLWVKTGRHLVLAREVELRELFKDCDMGALPPVCMAYGMKTFLEEHLAQQP CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC EVYFEAGDHQALIHMMQDEFLMLMETAERAHFSHRMQGMMLS CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PVSATLQDCLRQKSSRYEVVYHPYSHTSMETAAAAHIPGDRLAKTVLLEDAEGYVAAVL CCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEE PTTHAVRLSDLWVKTGRHLVLAREVELRELFKDCDMGALPPVCMAYGMKTFLEEHLAQQP CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC EVYFEAGDHQALIHMMQDEFLMLMETAERAHFSHRMQGMMLS CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA