Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689739
Identifier: 116689739
GI number: 116689739
Start: 1911440
End: 1912141
Strand: Reverse
Name: 116689739
Synonym: Bcen2424_1717
Alternate gene names: NA
Gene position: 1912141-1911440 (Counterclockwise)
Preceding gene: 116689740
Following gene: 116689738
Centisome position: 54.89
GC content: 65.81
Gene sequence:
>702_bases ATGAAAGTCGAAGAGCATCTGGTTGCTTCGAACAGCGGTCTGGCCACGCTGGGCCGTCCGCGGGAATTCGGCAAGAAGCA GCAGAATCCGGTGCGCCGTTTCGGCGGCATCGCAGTCGTCCTCCTGTTGCATGCAGTGCTGATCTACGCATTGCTCAATG GCCTCGCGACCAAGGTCGTGCAGGTGATCCAGCATCCGATCGAAACCCGCATCATCGAGCCGGTGAAGCCGCCGCCGCCC CCGCCGATGCCGGTCGTCAAGCTTCCGCCGCCGAAGTTCGCGCCGCCGCCGCCGCCGTTCGTGCCGCCGCCCGAAGTGCC GGTGCAGGCACCCCCGCAGCAGGCGACCATCACGCACCAGTCGGCACCGGTGCCGTCCGCGCCGGCCGTGCAGGCGCCGG TCGTCGCACCGCCCGCGCCGGCCAAGCCGGTCAGTCACGAAGTGGGTGTCGTCTGCCCGAATTCGGACTCGATGCGCGCG TCGATGCAGTACCCGAAGGAAGCGCAGGAAAACAACATCACGGGTGACGTGACGATCGAGTTCGTCGTGGATGCGGAAGG GAACATCACGAACGAACGCGTGGCCCAGTCGGCCGACCCCGTGCTCGATCGTGCGGCCTACAACACCGTGAAGCGGTTCA AATGCGTGGCGCAAGGCCAGGCGGTACGGGTGCAGGTGCCGTTCTCGTTCAACCTGAATTGA
Upstream 100 bases:
>100_bases AAATGAAATTTCGAGTTGAGGCGGAGACGGAACCGACCCGGTTCCGGCGCCGGCCATCATCGCGAAACTGGGCGATTCGC TTGGGGGAAGGATAGTGGGC
Downstream 100 bases:
>100_bases TGCAGTGGGCGGTCCGGCGGGAGCCGGACCGGTGAAAACCGGCTTGAACCTAAATCGTAAGTTAAACGAAAGAATTGGAG TGGGGTATGACGAAGCGTTC
Product: TonB family protein
Products: NA
Alternate protein names: NB Family Protein; Periplasmic Protein nB; NB Protein
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MKVEEHLVASNSGLATLGRPREFGKKQQNPVRRFGGIAVVLLLHAVLIYALLNGLATKVVQVIQHPIETRIIEPVKPPPP PPMPVVKLPPPKFAPPPPPFVPPPEVPVQAPPQQATITHQSAPVPSAPAVQAPVVAPPAPAKPVSHEVGVVCPNSDSMRA SMQYPKEAQENNITGDVTIEFVVDAEGNITNERVAQSADPVLDRAAYNTVKRFKCVAQGQAVRVQVPFSFNLN
Sequences:
>Translated_233_residues MKVEEHLVASNSGLATLGRPREFGKKQQNPVRRFGGIAVVLLLHAVLIYALLNGLATKVVQVIQHPIETRIIEPVKPPPP PPMPVVKLPPPKFAPPPPPFVPPPEVPVQAPPQQATITHQSAPVPSAPAVQAPVVAPPAPAKPVSHEVGVVCPNSDSMRA SMQYPKEAQENNITGDVTIEFVVDAEGNITNERVAQSADPVLDRAAYNTVKRFKCVAQGQAVRVQVPFSFNLN >Mature_233_residues MKVEEHLVASNSGLATLGRPREFGKKQQNPVRRFGGIAVVLLLHAVLIYALLNGLATKVVQVIQHPIETRIIEPVKPPPP PPMPVVKLPPPKFAPPPPPFVPPPEVPVQAPPQQATITHQSAPVPSAPAVQAPVVAPPAPAKPVSHEVGVVCPNSDSMRA SMQYPKEAQENNITGDVTIEFVVDAEGNITNERVAQSADPVLDRAAYNTVKRFKCVAQGQAVRVQVPFSFNLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24971; Mature: 24971
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVEEHLVASNSGLATLGRPREFGKKQQNPVRRFGGIAVVLLLHAVLIYALLNGLATKVV CCCHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVIQHPIETRIIEPVKPPPPPPMPVVKLPPPKFAPPPPPFVPPPEVPVQAPPQQATITHQ HHHHCCHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC SAPVPSAPAVQAPVVAPPAPAKPVSHEVGVVCPNSDSMRASMQYPKEAQENNITGDVTIE CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCHHHHCCCCCEEEEE FVVDAEGNITNERVAQSADPVLDRAAYNTVKRFKCVAQGQAVRVQVPFSFNLN EEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCC >Mature Secondary Structure MKVEEHLVASNSGLATLGRPREFGKKQQNPVRRFGGIAVVLLLHAVLIYALLNGLATKVV CCCHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVIQHPIETRIIEPVKPPPPPPMPVVKLPPPKFAPPPPPFVPPPEVPVQAPPQQATITHQ HHHHCCHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC SAPVPSAPAVQAPVVAPPAPAKPVSHEVGVVCPNSDSMRASMQYPKEAQENNITGDVTIE CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCHHHHCCCCCEEEEE FVVDAEGNITNERVAQSADPVLDRAAYNTVKRFKCVAQGQAVRVQVPFSFNLN EEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA