Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116689710
Identifier: 116689710
GI number: 116689710
Start: 1876998
End: 1877501
Strand: Direct
Name: 116689710
Synonym: Bcen2424_1688
Alternate gene names: NA
Gene position: 1876998-1877501 (Clockwise)
Preceding gene: 116689709
Following gene: 116689711
Centisome position: 53.88
GC content: 68.06
Gene sequence:
>504_bases ATGGATACCGCGCACGACACGCGGACGTTGCAGACTACGCGGCGTTCACCCGATCGACGGATATCCATGAAGTTTCACAC GCTGCTGACACTCGCCGGCGCTTCGACGCTGCTGGCCGCCTGCAATCTGCTTCACGACGGTCCCGGATCGAGCGACGTCG ACGCCGCCGTGCGCCGCGCGCTCGAAGCGGAAAACCACGGCGGGCTGAACGCGCTGTTCGGCCAGCCGTTGCCCGTGTCG GCCGACGTCGTGTCGGCGAAACCCGACGGCGACTGCAAGAAGCTCGGCGATCGCACGTATTCGTGCGACGTCGTGGTCAC GTGGCGCAATGCCGATTACTCGCCGTCGCGCGCGAACCTGACCTTCGTGAAGGCGGCCGACGGCGCATGGCAGACGTCGG GCGTCGACGCGGCGCTCGTGACGGGCACCGCGAAGTCGCTGATCGACCATATCGGCAAGGCGTGGCCGGGCAATGCGGCG AGCGGCGCGTCGGCGCCGGAGTGA
Upstream 100 bases:
>100_bases AGTTCGTCAGTCCAACGCAGCTCGTGAGCCGCGTGAAGCAGGAGCGGCAGTAGGCGAGGGCGGCAACGGACGCGCCAGGC GGCCGTGCAATTGGTTACAA
Downstream 100 bases:
>100_bases CGCAATGGGCCAGTGACGCGTCGGCCACCGGCAAGCCCGCTTTCCCCCCTCGTGCAGGCGGCCCCGTTCGTACGGGCCGC GCCGCCCGCTTTTTCGATAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 167; Mature: 167
Protein sequence:
>167_residues MDTAHDTRTLQTTRRSPDRRISMKFHTLLTLAGASTLLAACNLLHDGPGSSDVDAAVRRALEAENHGGLNALFGQPLPVS ADVVSAKPDGDCKKLGDRTYSCDVVVTWRNADYSPSRANLTFVKAADGAWQTSGVDAALVTGTAKSLIDHIGKAWPGNAA SGASAPE
Sequences:
>Translated_167_residues MDTAHDTRTLQTTRRSPDRRISMKFHTLLTLAGASTLLAACNLLHDGPGSSDVDAAVRRALEAENHGGLNALFGQPLPVS ADVVSAKPDGDCKKLGDRTYSCDVVVTWRNADYSPSRANLTFVKAADGAWQTSGVDAALVTGTAKSLIDHIGKAWPGNAA SGASAPE >Mature_167_residues MDTAHDTRTLQTTRRSPDRRISMKFHTLLTLAGASTLLAACNLLHDGPGSSDVDAAVRRALEAENHGGLNALFGQPLPVS ADVVSAKPDGDCKKLGDRTYSCDVVVTWRNADYSPSRANLTFVKAADGAWQTSGVDAALVTGTAKSLIDHIGKAWPGNAA SGASAPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17472; Mature: 17472
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTAHDTRTLQTTRRSPDRRISMKFHTLLTLAGASTLLAACNLLHDGPGSSDVDAAVRRA CCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH LEAENHGGLNALFGQPLPVSADVVSAKPDGDCKKLGDRTYSCDVVVTWRNADYSPSRANL HHCCCCCCCHHHCCCCCCCCCEEEECCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCCCE TFVKAADGAWQTSGVDAALVTGTAKSLIDHIGKAWPGNAASGASAPE EEEEECCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MDTAHDTRTLQTTRRSPDRRISMKFHTLLTLAGASTLLAACNLLHDGPGSSDVDAAVRRA CCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH LEAENHGGLNALFGQPLPVSADVVSAKPDGDCKKLGDRTYSCDVVVTWRNADYSPSRANL HHCCCCCCCHHHCCCCCCCCCEEEECCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCCCE TFVKAADGAWQTSGVDAALVTGTAKSLIDHIGKAWPGNAASGASAPE EEEEECCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA