Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

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The map label for this gene is fadE12 [H]

Identifier: 116689690

GI number: 116689690

Start: 1853721

End: 1854887

Strand: Direct

Name: fadE12 [H]

Synonym: Bcen2424_1668

Alternate gene names: 116689690

Gene position: 1853721-1854887 (Clockwise)

Preceding gene: 116689689

Following gene: 116689691

Centisome position: 53.21

GC content: 67.78

Gene sequence:

>1167_bases
ATGCAGTTCGACCTGACCGACGACCAGCGCGCGATCGAAAGCGCGATCGAGAAAATCTGCGAGCGCTTCGGCGACGACTA
CTGGCTCGAACGCGATCGCACGGGCGGATTTCCGGCCGACTTCCACGCGGCGCTCGCCGAGGCCGGCTGGCTCGGCATCG
CGATGGACCCGGCCTACGGCGGCGCCGGGCTCGGGATGACCGAGGCGGCGCTGATGATGCGCACGATCAGCGCGTCGGGC
GCCGGCTTGTCCGGCGCGTCGGCCGTCCACATGAACATCTTCGGGCTGAACCCGGTGCAGGTGTTCGGCAACGATGCGCA
GAAGGCGCGCTTCCTGCCGCCCCTGATCGCCGGGCGCGACAAGGCGTGCTTCGCGGTGACGGAACCCGACGCCGGGCTCG
ACACCACGCACCTGACCACCCAGGCGCGCCGCGACGGCGATCACTACGTGCTGAGCGGGCGCAAGATCTGGATCTCGACC
GCGCAGGTGGCGAACAAGATGCTGATCATCGCGCGCACGACGCCGCTCGACCAGGTCGCGAAGCCGACCGACGGGCTGAG
CCTGTTCTATACCGACCTCGACCGTTCACGCGTCGAGGTGCGCGAGATCGAGAAGATGGGCCGCAAGGCGGTCGATTCGA
ACATGCTCTTCATCGACAACCTGCGCGTGTCGCGCGACGACCTGATCGGCAACGAAGGCGACGGCTTCCGCTATCTGCTG
CACGGGCTGAACCCGGAACGCATCCTGATCGCCGCGGAGGCGATCGGGCTCGGGCAGGCCGCGCTGCGCCGCGCGACGCA
GTACGCGTGCGAGCGCGTGGTGTTCGGCCGGCCGATCGGGCAGAACCAGTCGATCCAGCATCCGCTCGCGCAGGCGTGGA
TGCAGCTCGAGGCCGCATGGCTGATGGTGATGAAGGCCGCGACGCGCTACGACGCGGGTCAATCGTGCGGCGCGGAGGCG
AACGCGGCGAAATACCTCGGCGCGGAAGCCGCGTTCCAGGCCTGCCAGACGGCGATCGCGACGCACGGCGGGATGGGGTA
CGCGAAGGAATATCATGTCGAGCGCTATCTGCGCGAGTGTATGATTCCGAGGCTCGCGCCCGTGAGTCCGCAACTGATCC
TGTGCTACATCGCGGAGAAGGTGCTCGGGCTGCCGAAGTCGTACTGA

Upstream 100 bases:

>100_bases
TGTTCGCCGCCACCGTGCTGATGGTCTTCGCCGCGGTCGCGACGGGCGTGTTTCCATTGTGAGCGGCGCGGCCGTTCACG
CTTTTTCGGGAGAGCAGTCC

Downstream 100 bases:

>100_bases
CCGTAGCGCCCCGGCGGCCCGCCCGGCGCGCGGTTTCCCGTTCCGAATCAAGCGCTCGTCATGGACGTCAAACTCGTTGC
CCGCACGCTCGACCTGTTCG

Product: acyl-CoA dehydrogenase domain-containing protein

Products: 2,3-dehydroacyl-CoA; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYGGAGLGMTEAALMMRTISASG
AGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRDKACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWIST
AQVANKMLIIARTTPLDQVAKPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL
HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAWLMVMKAATRYDAGQSCGAEA
NAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLRECMIPRLAPVSPQLILCYIAEKVLGLPKSY

Sequences:

>Translated_388_residues
MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYGGAGLGMTEAALMMRTISASG
AGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRDKACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWIST
AQVANKMLIIARTTPLDQVAKPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL
HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAWLMVMKAATRYDAGQSCGAEA
NAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLRECMIPRLAPVSPQLILCYIAEKVLGLPKSY
>Mature_388_residues
MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYGGAGLGMTEAALMMRTISASG
AGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRDKACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWIST
AQVANKMLIIARTTPLDQVAKPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL
HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAWLMVMKAATRYDAGQSCGAEA
NAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLRECMIPRLAPVSPQLILCYIAEKVLGLPKSY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=378, Percent_Identity=30.4232804232804, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI187960098, Length=373, Percent_Identity=28.4182305630027, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI4557231, Length=373, Percent_Identity=28.4182305630027, Blast_Score=173, Evalue=2e-43,
Organism=Homo sapiens, GI226958412, Length=359, Percent_Identity=29.2479108635098, Blast_Score=165, Evalue=7e-41,
Organism=Homo sapiens, GI4557233, Length=352, Percent_Identity=31.5340909090909, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI226958414, Length=322, Percent_Identity=30.1242236024845, Blast_Score=159, Evalue=4e-39,
Organism=Homo sapiens, GI21361497, Length=357, Percent_Identity=28.8515406162465, Blast_Score=152, Evalue=4e-37,
Organism=Homo sapiens, GI7656849, Length=365, Percent_Identity=28.7671232876712, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI76496475, Length=339, Percent_Identity=30.0884955752212, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI4557235, Length=339, Percent_Identity=30.0884955752212, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI4501857, Length=330, Percent_Identity=28.1818181818182, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI7669494, Length=361, Percent_Identity=24.9307479224377, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI4503943, Length=361, Percent_Identity=24.9307479224377, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI38505218, Length=294, Percent_Identity=26.8707482993197, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI48976061, Length=324, Percent_Identity=25.3086419753086, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI211971008, Length=324, Percent_Identity=25.3086419753086, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI87081958, Length=387, Percent_Identity=27.906976744186, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1786223, Length=384, Percent_Identity=27.0833333333333, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87082384, Length=272, Percent_Identity=27.2058823529412, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87081702, Length=307, Percent_Identity=23.1270358306189, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71985184, Length=385, Percent_Identity=31.1688311688312, Blast_Score=173, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17570075, Length=387, Percent_Identity=29.9741602067183, Blast_Score=172, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17569725, Length=388, Percent_Identity=28.8659793814433, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17506239, Length=378, Percent_Identity=27.5132275132275, Blast_Score=166, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17534899, Length=378, Percent_Identity=29.3650793650794, Blast_Score=165, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17538396, Length=360, Percent_Identity=28.3333333333333, Blast_Score=160, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI17508101, Length=336, Percent_Identity=30.3571428571429, Blast_Score=158, Evalue=4e-39,
Organism=Caenorhabditis elegans, GI71985192, Length=319, Percent_Identity=30.4075235109718, Blast_Score=139, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI71990804, Length=298, Percent_Identity=30.5369127516779, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17533517, Length=353, Percent_Identity=25.7790368271955, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17534353, Length=356, Percent_Identity=25.561797752809, Blast_Score=120, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI32563615, Length=236, Percent_Identity=28.8135593220339, Blast_Score=117, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17551932, Length=354, Percent_Identity=25.9887005649718, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17505929, Length=351, Percent_Identity=26.7806267806268, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71982178, Length=274, Percent_Identity=27.007299270073, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17531909, Length=243, Percent_Identity=27.1604938271605, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17562446, Length=262, Percent_Identity=27.4809160305344, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17531913, Length=161, Percent_Identity=26.7080745341615, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24666513, Length=380, Percent_Identity=32.3684210526316, Blast_Score=183, Evalue=2e-46,
Organism=Drosophila melanogaster, GI21356377, Length=379, Percent_Identity=31.1345646437995, Blast_Score=172, Evalue=3e-43,
Organism=Drosophila melanogaster, GI281363737, Length=381, Percent_Identity=30.1837270341207, Blast_Score=162, Evalue=2e-40,
Organism=Drosophila melanogaster, GI24646207, Length=372, Percent_Identity=31.1827956989247, Blast_Score=161, Evalue=7e-40,
Organism=Drosophila melanogaster, GI24660351, Length=371, Percent_Identity=28.8409703504043, Blast_Score=157, Evalue=1e-38,
Organism=Drosophila melanogaster, GI21355753, Length=323, Percent_Identity=29.4117647058824, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI19920834, Length=363, Percent_Identity=25.8953168044077, Blast_Score=106, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.3

Molecular weight: Translated: 42408; Mature: 42408

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYG
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC
GAGLGMTEAALMMRTISASGAGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRD
CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHCCCHHHCCCC
KACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWISTAQVANKMLIIARTTPLDQVA
CEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEHHHHHCEEEEEEECCCHHHHC
KPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCEECHHHHCCCCCCCHHHHH
HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAW
HCCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
LMVMKAATRYDAGQSCGAEANAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLREC
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
MIPRLAPVSPQLILCYIAEKVLGLPKSY
CCCCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYG
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC
GAGLGMTEAALMMRTISASGAGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRD
CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHCCCHHHCCCC
KACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWISTAQVANKMLIIARTTPLDQVA
CEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEHHHHHCEEEEEEECCCHHHHC
KPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCEECHHHHCCCCCCCHHHHH
HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAW
HCCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
LMVMKAATRYDAGQSCGAEANAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLREC
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
MIPRLAPVSPQLILCYIAEKVLGLPKSY
CCCCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: acyl-CoA; acceptor

Specific reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]