Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is fadE12 [H]
Identifier: 116689690
GI number: 116689690
Start: 1853721
End: 1854887
Strand: Direct
Name: fadE12 [H]
Synonym: Bcen2424_1668
Alternate gene names: 116689690
Gene position: 1853721-1854887 (Clockwise)
Preceding gene: 116689689
Following gene: 116689691
Centisome position: 53.21
GC content: 67.78
Gene sequence:
>1167_bases ATGCAGTTCGACCTGACCGACGACCAGCGCGCGATCGAAAGCGCGATCGAGAAAATCTGCGAGCGCTTCGGCGACGACTA CTGGCTCGAACGCGATCGCACGGGCGGATTTCCGGCCGACTTCCACGCGGCGCTCGCCGAGGCCGGCTGGCTCGGCATCG CGATGGACCCGGCCTACGGCGGCGCCGGGCTCGGGATGACCGAGGCGGCGCTGATGATGCGCACGATCAGCGCGTCGGGC GCCGGCTTGTCCGGCGCGTCGGCCGTCCACATGAACATCTTCGGGCTGAACCCGGTGCAGGTGTTCGGCAACGATGCGCA GAAGGCGCGCTTCCTGCCGCCCCTGATCGCCGGGCGCGACAAGGCGTGCTTCGCGGTGACGGAACCCGACGCCGGGCTCG ACACCACGCACCTGACCACCCAGGCGCGCCGCGACGGCGATCACTACGTGCTGAGCGGGCGCAAGATCTGGATCTCGACC GCGCAGGTGGCGAACAAGATGCTGATCATCGCGCGCACGACGCCGCTCGACCAGGTCGCGAAGCCGACCGACGGGCTGAG CCTGTTCTATACCGACCTCGACCGTTCACGCGTCGAGGTGCGCGAGATCGAGAAGATGGGCCGCAAGGCGGTCGATTCGA ACATGCTCTTCATCGACAACCTGCGCGTGTCGCGCGACGACCTGATCGGCAACGAAGGCGACGGCTTCCGCTATCTGCTG CACGGGCTGAACCCGGAACGCATCCTGATCGCCGCGGAGGCGATCGGGCTCGGGCAGGCCGCGCTGCGCCGCGCGACGCA GTACGCGTGCGAGCGCGTGGTGTTCGGCCGGCCGATCGGGCAGAACCAGTCGATCCAGCATCCGCTCGCGCAGGCGTGGA TGCAGCTCGAGGCCGCATGGCTGATGGTGATGAAGGCCGCGACGCGCTACGACGCGGGTCAATCGTGCGGCGCGGAGGCG AACGCGGCGAAATACCTCGGCGCGGAAGCCGCGTTCCAGGCCTGCCAGACGGCGATCGCGACGCACGGCGGGATGGGGTA CGCGAAGGAATATCATGTCGAGCGCTATCTGCGCGAGTGTATGATTCCGAGGCTCGCGCCCGTGAGTCCGCAACTGATCC TGTGCTACATCGCGGAGAAGGTGCTCGGGCTGCCGAAGTCGTACTGA
Upstream 100 bases:
>100_bases TGTTCGCCGCCACCGTGCTGATGGTCTTCGCCGCGGTCGCGACGGGCGTGTTTCCATTGTGAGCGGCGCGGCCGTTCACG CTTTTTCGGGAGAGCAGTCC
Downstream 100 bases:
>100_bases CCGTAGCGCCCCGGCGGCCCGCCCGGCGCGCGGTTTCCCGTTCCGAATCAAGCGCTCGTCATGGACGTCAAACTCGTTGC CCGCACGCTCGACCTGTTCG
Product: acyl-CoA dehydrogenase domain-containing protein
Products: 2,3-dehydroacyl-CoA; reduced acceptor
Alternate protein names: NA
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYGGAGLGMTEAALMMRTISASG AGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRDKACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWIST AQVANKMLIIARTTPLDQVAKPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAWLMVMKAATRYDAGQSCGAEA NAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLRECMIPRLAPVSPQLILCYIAEKVLGLPKSY
Sequences:
>Translated_388_residues MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYGGAGLGMTEAALMMRTISASG AGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRDKACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWIST AQVANKMLIIARTTPLDQVAKPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAWLMVMKAATRYDAGQSCGAEA NAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLRECMIPRLAPVSPQLILCYIAEKVLGLPKSY >Mature_388_residues MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYGGAGLGMTEAALMMRTISASG AGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRDKACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWIST AQVANKMLIIARTTPLDQVAKPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAWLMVMKAATRYDAGQSCGAEA NAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLRECMIPRLAPVSPQLILCYIAEKVLGLPKSY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4501859, Length=378, Percent_Identity=30.4232804232804, Blast_Score=181, Evalue=1e-45, Organism=Homo sapiens, GI187960098, Length=373, Percent_Identity=28.4182305630027, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI4557231, Length=373, Percent_Identity=28.4182305630027, Blast_Score=173, Evalue=2e-43, Organism=Homo sapiens, GI226958412, Length=359, Percent_Identity=29.2479108635098, Blast_Score=165, Evalue=7e-41, Organism=Homo sapiens, GI4557233, Length=352, Percent_Identity=31.5340909090909, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI226958414, Length=322, Percent_Identity=30.1242236024845, Blast_Score=159, Evalue=4e-39, Organism=Homo sapiens, GI21361497, Length=357, Percent_Identity=28.8515406162465, Blast_Score=152, Evalue=4e-37, Organism=Homo sapiens, GI7656849, Length=365, Percent_Identity=28.7671232876712, Blast_Score=151, Evalue=1e-36, Organism=Homo sapiens, GI76496475, Length=339, Percent_Identity=30.0884955752212, Blast_Score=144, Evalue=1e-34, Organism=Homo sapiens, GI4557235, Length=339, Percent_Identity=30.0884955752212, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI4501857, Length=330, Percent_Identity=28.1818181818182, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI7669494, Length=361, Percent_Identity=24.9307479224377, Blast_Score=105, Evalue=8e-23, Organism=Homo sapiens, GI4503943, Length=361, Percent_Identity=24.9307479224377, Blast_Score=105, Evalue=1e-22, Organism=Homo sapiens, GI38505218, Length=294, Percent_Identity=26.8707482993197, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI48976061, Length=324, Percent_Identity=25.3086419753086, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI211971008, Length=324, Percent_Identity=25.3086419753086, Blast_Score=91, Evalue=1e-18, Organism=Escherichia coli, GI87081958, Length=387, Percent_Identity=27.906976744186, Blast_Score=167, Evalue=1e-42, Organism=Escherichia coli, GI1786223, Length=384, Percent_Identity=27.0833333333333, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI87082384, Length=272, Percent_Identity=27.2058823529412, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI87081702, Length=307, Percent_Identity=23.1270358306189, Blast_Score=62, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71985184, Length=385, Percent_Identity=31.1688311688312, Blast_Score=173, Evalue=1e-43, Organism=Caenorhabditis elegans, GI17570075, Length=387, Percent_Identity=29.9741602067183, Blast_Score=172, Evalue=2e-43, Organism=Caenorhabditis elegans, GI17569725, Length=388, Percent_Identity=28.8659793814433, Blast_Score=169, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17506239, Length=378, Percent_Identity=27.5132275132275, Blast_Score=166, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17534899, Length=378, Percent_Identity=29.3650793650794, Blast_Score=165, Evalue=4e-41, Organism=Caenorhabditis elegans, GI17538396, Length=360, Percent_Identity=28.3333333333333, Blast_Score=160, Evalue=8e-40, Organism=Caenorhabditis elegans, GI17508101, Length=336, Percent_Identity=30.3571428571429, Blast_Score=158, Evalue=4e-39, Organism=Caenorhabditis elegans, GI71985192, Length=319, Percent_Identity=30.4075235109718, Blast_Score=139, Evalue=3e-33, Organism=Caenorhabditis elegans, GI71990804, Length=298, Percent_Identity=30.5369127516779, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17533517, Length=353, Percent_Identity=25.7790368271955, Blast_Score=122, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17534353, Length=356, Percent_Identity=25.561797752809, Blast_Score=120, Evalue=8e-28, Organism=Caenorhabditis elegans, GI32563615, Length=236, Percent_Identity=28.8135593220339, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17551932, Length=354, Percent_Identity=25.9887005649718, Blast_Score=117, Evalue=9e-27, Organism=Caenorhabditis elegans, GI17505929, Length=351, Percent_Identity=26.7806267806268, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI71982178, Length=274, Percent_Identity=27.007299270073, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17531909, Length=243, Percent_Identity=27.1604938271605, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562446, Length=262, Percent_Identity=27.4809160305344, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17531913, Length=161, Percent_Identity=26.7080745341615, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24666513, Length=380, Percent_Identity=32.3684210526316, Blast_Score=183, Evalue=2e-46, Organism=Drosophila melanogaster, GI21356377, Length=379, Percent_Identity=31.1345646437995, Blast_Score=172, Evalue=3e-43, Organism=Drosophila melanogaster, GI281363737, Length=381, Percent_Identity=30.1837270341207, Blast_Score=162, Evalue=2e-40, Organism=Drosophila melanogaster, GI24646207, Length=372, Percent_Identity=31.1827956989247, Blast_Score=161, Evalue=7e-40, Organism=Drosophila melanogaster, GI24660351, Length=371, Percent_Identity=28.8409703504043, Blast_Score=157, Evalue=1e-38, Organism=Drosophila melanogaster, GI21355753, Length=323, Percent_Identity=29.4117647058824, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI19920834, Length=363, Percent_Identity=25.8953168044077, Blast_Score=106, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006092 - InterPro: IPR006090 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]
EC number: 1.3.99.3
Molecular weight: Translated: 42408; Mature: 42408
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYG CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC GAGLGMTEAALMMRTISASGAGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRD CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHCCCHHHCCCC KACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWISTAQVANKMLIIARTTPLDQVA CEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEHHHHHCEEEEEEECCCHHHHC KPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCEECHHHHCCCCCCCHHHHH HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAW HCCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH LMVMKAATRYDAGQSCGAEANAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLREC HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH MIPRLAPVSPQLILCYIAEKVLGLPKSY CCCCCCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MQFDLTDDQRAIESAIEKICERFGDDYWLERDRTGGFPADFHAALAEAGWLGIAMDPAYG CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCC GAGLGMTEAALMMRTISASGAGLSGASAVHMNIFGLNPVQVFGNDAQKARFLPPLIAGRD CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHCCCCCHHHHHCCCHHHCCCC KACFAVTEPDAGLDTTHLTTQARRDGDHYVLSGRKIWISTAQVANKMLIIARTTPLDQVA CEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEHHHHHCEEEEEEECCCHHHHC KPTDGLSLFYTDLDRSRVEVREIEKMGRKAVDSNMLFIDNLRVSRDDLIGNEGDGFRYLL CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCEECHHHHCCCCCCCHHHHH HGLNPERILIAAEAIGLGQAALRRATQYACERVVFGRPIGQNQSIQHPLAQAWMQLEAAW HCCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH LMVMKAATRYDAGQSCGAEANAAKYLGAEAAFQACQTAIATHGGMGYAKEYHVERYLREC HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH MIPRLAPVSPQLILCYIAEKVLGLPKSY CCCCCCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: acyl-CoA; acceptor
Specific reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]