Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is citN [H]
Identifier: 116689689
GI number: 116689689
Start: 1852381
End: 1853682
Strand: Direct
Name: citN [H]
Synonym: Bcen2424_1667
Alternate gene names: 116689689
Gene position: 1852381-1853682 (Clockwise)
Preceding gene: 116689688
Following gene: 116689690
Centisome position: 53.17
GC content: 67.74
Gene sequence:
>1302_bases ATGCTCGCATGGATCGGCGCGGTCGCCATCGTCGCGCTGTTCGGCCTGATCATCACGAAGCGGTTGTCGCCGCTCGTCGC GCTGATCGTCGTGCCGGTGGCCGCGTCGCTCGCGGCCGGTTTCGGGCTTCAGACCGGCAAGTTCGTCGTGCACGGCGTAC AGAACATCGGCCCGATCGCCGGGATGTTCGTTTTTGCGATTCTATTTTTCGGAATCCTCACCGACGCGGGGATGCTCGAT CCGATCATAGCCGGCGTGCTGCGCGTGATCGGCTGCCATCCGCCGCGCATCGTGATGGGCTCGGCGCTGCTCGCGCTGCT GATCCATCTCGACGGCTCGGGCGCCGTCACGTTTCTCGTCACGCTGCCCGCGATGATGCCGCTCTATACGCGACTCGGGA TGGATCGCCGCATTCTCGCGTGCGTCGCGTCGATGGCGGCCGGCGTCAACTTCCTGCCATGGGTCGGGCCGATGCTGCGC GCGTCGGCGGCGCTGCACATTCCCGGCTCGGCGATCTTCACGCCGATGATCCCGGTGCAGATCGTCGGGCTTGCGTTCGT GTTCGGCACCGCGTACGTGCTTGGCGTGCGCGAGGCGAAACGGCTCGGGCTCGACCGCGCCGGCGCGGCCGCGCTCGCGA TCGCGCCGCGCGAGCTGACCGACGCCGAACGCGCGTTGCGCCGGCCGGGACGCTTCGGGATCAACGTCGCGCTCACGCTC GTCGTGCTCGTCACGCTGGTGTCCGGCATCGTCGATCCGATGGTGATGTTCATGCTCGGCACGGTCGCCGCGCTCGTGAT CAATTACCCGGACGTGCAGGCGCAGCGCGAACGGATCGACGCGCATGCGAAGGCCGCGCTGATGATGGCGAGCGTGCTGC TCGCGGCCGGCGCGTTCACCGGCATCATGTCCGGCACCGGGATGCTGAAGGCGATGGCCGAGGTCGTCGTCGCGCACGTG CCCATCGAGCATGCGCGCCACATGCCGTTCGTGCTCGGGCTGCTGTCGATGCCGCTCAGCCTGCTGTTCGATCCCGATTC GTTCTACTTCGGCGTGCTGCCGGTGCTCGCGGAGAGCGGCAAGCTGCTCGGCGTGCCGCCGATCCAGATGGCGCAGGCCG CGCTGCTCGGCCAGATGACGACCGGTTTTCCGGTAAGCCCGCTCACGCCCGCGACGTTCCTGATCGTCGGGCTGACCGGC GTCGAGCTCGCCGAGCACCAGAAATTCACGATTCCGTTCCTGTTCGCCGCCACCGTGCTGATGGTCTTCGCCGCGGTCGC GACGGGCGTGTTTCCATTGTGA
Upstream 100 bases:
>100_bases GGCGCCCGGCCACGTGCCGCGCACACCATCATTCGGACATCACGCCGGCCCGCACATCGACACGCCGCTCGATGCGCACC GGCTGAAGAGGAGACGCATC
Downstream 100 bases:
>100_bases GCGGCGCGGCCGTTCACGCTTTTTCGGGAGAGCAGTCCATGCAGTTCGACCTGACCGACGACCAGCGCGCGATCGAAAGC GCGATCGAGAAAATCTGCGA
Product: CitMHS family citrate/H+ symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MLAWIGAVAIVALFGLIITKRLSPLVALIVVPVAASLAAGFGLQTGKFVVHGVQNIGPIAGMFVFAILFFGILTDAGMLD PIIAGVLRVIGCHPPRIVMGSALLALLIHLDGSGAVTFLVTLPAMMPLYTRLGMDRRILACVASMAAGVNFLPWVGPMLR ASAALHIPGSAIFTPMIPVQIVGLAFVFGTAYVLGVREAKRLGLDRAGAAALAIAPRELTDAERALRRPGRFGINVALTL VVLVTLVSGIVDPMVMFMLGTVAALVINYPDVQAQRERIDAHAKAALMMASVLLAAGAFTGIMSGTGMLKAMAEVVVAHV PIEHARHMPFVLGLLSMPLSLLFDPDSFYFGVLPVLAESGKLLGVPPIQMAQAALLGQMTTGFPVSPLTPATFLIVGLTG VELAEHQKFTIPFLFAATVLMVFAAVATGVFPL
Sequences:
>Translated_433_residues MLAWIGAVAIVALFGLIITKRLSPLVALIVVPVAASLAAGFGLQTGKFVVHGVQNIGPIAGMFVFAILFFGILTDAGMLD PIIAGVLRVIGCHPPRIVMGSALLALLIHLDGSGAVTFLVTLPAMMPLYTRLGMDRRILACVASMAAGVNFLPWVGPMLR ASAALHIPGSAIFTPMIPVQIVGLAFVFGTAYVLGVREAKRLGLDRAGAAALAIAPRELTDAERALRRPGRFGINVALTL VVLVTLVSGIVDPMVMFMLGTVAALVINYPDVQAQRERIDAHAKAALMMASVLLAAGAFTGIMSGTGMLKAMAEVVVAHV PIEHARHMPFVLGLLSMPLSLLFDPDSFYFGVLPVLAESGKLLGVPPIQMAQAALLGQMTTGFPVSPLTPATFLIVGLTG VELAEHQKFTIPFLFAATVLMVFAAVATGVFPL >Mature_433_residues MLAWIGAVAIVALFGLIITKRLSPLVALIVVPVAASLAAGFGLQTGKFVVHGVQNIGPIAGMFVFAILFFGILTDAGMLD PIIAGVLRVIGCHPPRIVMGSALLALLIHLDGSGAVTFLVTLPAMMPLYTRLGMDRRILACVASMAAGVNFLPWVGPMLR ASAALHIPGSAIFTPMIPVQIVGLAFVFGTAYVLGVREAKRLGLDRAGAAALAIAPRELTDAERALRRPGRFGINVALTL VVLVTLVSGIVDPMVMFMLGTVAALVINYPDVQAQRERIDAHAKAALMMASVLLAAGAFTGIMSGTGMLKAMAEVVVAHV PIEHARHMPFVLGLLSMPLSLLFDPDSFYFGVLPVLAESGKLLGVPPIQMAQAALLGQMTTGFPVSPLTPATFLIVGLTG VELAEHQKFTIPFLFAATVLMVFAAVATGVFPL
Specific function: Transports the free citrate anion. Probably cotransports citrate and at least three or four protons. The citrate uptake is inhibited by the presence of magnesium ions [H]
COG id: COG2851
COG function: function code C; H+/citrate symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014738 - InterPro: IPR004680 [H]
Pfam domain/function: PF03600 CitMHS [H]
EC number: NA
Molecular weight: Translated: 45281; Mature: 45281
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAWIGAVAIVALFGLIITKRLSPLVALIVVPVAASLAAGFGLQTGKFVVHGVQNIGPIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHH GMFVFAILFFGILTDAGMLDPIIAGVLRVIGCHPPRIVMGSALLALLIHLDGSGAVTFLV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH TLPAMMPLYTRLGMDRRILACVASMAAGVNFLPWVGPMLRASAALHIPGSAIFTPMIPVQ HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCHHHCCCHHHH IVGLAFVFGTAYVLGVREAKRLGLDRAGAAALAIAPRELTDAERALRRPGRFGINVALTL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHH VVLVTLVSGIVDPMVMFMLGTVAALVINYPDVQAQRERIDAHAKAALMMASVLLAAGAFT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIMSGTGMLKAMAEVVVAHVPIEHARHMPFVLGLLSMPLSLLFDPDSFYFGVLPVLAESG HHHCCCHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHCCHHHEECCCCHHHHHHHHHHCCC KLLGVPPIQMAQAALLGQMTTGFPVSPLTPATFLIVGLTGVELAEHQKFTIPFLFAATVL CEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH MVFAAVATGVFPL HHHHHHHHCCCCC >Mature Secondary Structure MLAWIGAVAIVALFGLIITKRLSPLVALIVVPVAASLAAGFGLQTGKFVVHGVQNIGPIA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHH GMFVFAILFFGILTDAGMLDPIIAGVLRVIGCHPPRIVMGSALLALLIHLDGSGAVTFLV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH TLPAMMPLYTRLGMDRRILACVASMAAGVNFLPWVGPMLRASAALHIPGSAIFTPMIPVQ HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCHHHCCCHHHH IVGLAFVFGTAYVLGVREAKRLGLDRAGAAALAIAPRELTDAERALRRPGRFGINVALTL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHH VVLVTLVSGIVDPMVMFMLGTVAALVINYPDVQAQRERIDAHAKAALMMASVLLAAGAFT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GIMSGTGMLKAMAEVVVAHVPIEHARHMPFVLGLLSMPLSLLFDPDSFYFGVLPVLAESG HHHCCCHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHCCHHHEECCCCHHHHHHHHHHCCC KLLGVPPIQMAQAALLGQMTTGFPVSPLTPATFLIVGLTGVELAEHQKFTIPFLFAATVL CEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH MVFAAVATGVFPL HHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377; 7704256; 8892821 [H]