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The map label for this gene is yfdE [H]

Identifier: 116689688

GI number: 116689688

Start: 1851073

End: 1852248

Strand: Direct

Name: yfdE [H]

Synonym: Bcen2424_1666

Alternate gene names: 116689688

Gene position: 1851073-1852248 (Clockwise)

Preceding gene: 116689685

Following gene: 116689689

Centisome position: 53.13

GC content: 70.58

Gene sequence:

>1176_bases
ATGGCGGAACACGAGCAGCAGGGCGCGCTGGCGGGATTGCGCATCATCGATCTGTCGCGGGTGCTGGGCGGCCCGTACGC
GACCCAGATCCTCGCCGATCACGGCGCGGAGGTGATCAAGGTCGAACCGCCGTCCGGCGACGAGACGCGCACGTGGGGCC
CGCCGTTCGACGGCGACACGGCGTCGTACTTCCTCGGCGTGAACCGCAACAAGCTCGGCATCGCGCTCGACCTGACGCAG
CCCGCCGATCGCGAGCGGCTGCTCGGGCTGCTCGAACACGCGGACGCGCTCGTCGAGAACTTCAAGATCGGTACGATGGA
GCGCTGGGGGCTCGGCTTCGACGCGCTGCATGCGCGGTTTCCGCGCCTCGTCTATTGCCGCGTGTCGGGTTTCGGCGCGG
ACGGCCCGCTCGGCGGCTTGCCGGGCTATGACGCGGCCGTGCAAGCGCTCGCCGGGCTGATGAGCGTCAACGGCGAAGCC
GGTGGCGCGCCGCTGCGGGTCGGCGTGCCGATCGTCGATCTCGTCACGGGGCTGAACGCGGCACTCGGCGTGCTGATGGC
GCTGCGTGAACGCGACGCCAGCGGCCGCGGCCAGTTCGTCGAATCGACGCTGTTCGACTGCGCGCTGTCGATCCTGCATC
CGCATACGCCGAACTTCTTCCATTCGGGCAACGCGCCCGTGCGCACCGGCAACGCGCATCCGAACATCACGCCGTACGAC
AGCTTTCCGACCGCGGGCGTCGACATCTTCCTGGCAGTCGGCAACAACGGGCAGTTCGCCGCGCTGTGCGACGTGCTCGG
CACGCGCGACTGGCTCGCCGATCCGCGTTTCGCGGACAACCGCGCGCGCAGCCAGCACCGCGCCGCGCTGCGCACGCTGC
TCGAAACGGCGCTGGCCGCGCACGACGGCGCGACGCTCGCCGAACGACTGATGCGCCGCGGCGTGCCGTGCGCGCCCGTG
CTCGGGCTCGATGCGGCGCTCGACCACCCGCATGTCGCGCATCGGCGGATGAAGGTCGAGCTGGGCCGGCATCGCGGCAT
CGCGTCGCCGATCAAGCTCGGCCGCACGCCGGCTACGTACCGGCATGCGCCGCCCGCGCTGAACGAACATGCGGCGCAGG
TGTTCGCGGCCGACAACGACGACAACGACAACGACAACGACAACCGCCGGACCTGA

Upstream 100 bases:

>100_bases
TTCACATACAAGAATTATTCGTCGAATCCGGAGAAGCCGCGTACAAGCGCCGAGCCGCCGGAACCGGCAGTCCGATCAAC
CGGAACCAGGAGCGAGACGC

Downstream 100 bases:

>100_bases
CCGGCATCGCGGCCGCCGACGTGCCGCATTGCGGCGCCCGGCCACGTGCCGCGCACACCATCATTCGGACATCACGCCGG
CCCGCACATCGACACGCCGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MAEHEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTQ
PADRERLLGLLEHADALVENFKIGTMERWGLGFDALHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEA
GGAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGNAPVRTGNAHPNITPYD
SFPTAGVDIFLAVGNNGQFAALCDVLGTRDWLADPRFADNRARSQHRAALRTLLETALAAHDGATLAERLMRRGVPCAPV
LGLDAALDHPHVAHRRMKVELGRHRGIASPIKLGRTPATYRHAPPALNEHAAQVFAADNDDNDNDNDNRRT

Sequences:

>Translated_391_residues
MAEHEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTQ
PADRERLLGLLEHADALVENFKIGTMERWGLGFDALHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEA
GGAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGNAPVRTGNAHPNITPYD
SFPTAGVDIFLAVGNNGQFAALCDVLGTRDWLADPRFADNRARSQHRAALRTLLETALAAHDGATLAERLMRRGVPCAPV
LGLDAALDHPHVAHRRMKVELGRHRGIASPIKLGRTPATYRHAPPALNEHAAQVFAADNDDNDNDNDNRRT
>Mature_390_residues
AEHEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDTASYFLGVNRNKLGIALDLTQP
ADRERLLGLLEHADALVENFKIGTMERWGLGFDALHARFPRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEAG
GAPLRVGVPIVDLVTGLNAALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGNAPVRTGNAHPNITPYDS
FPTAGVDIFLAVGNNGQFAALCDVLGTRDWLADPRFADNRARSQHRAALRTLLETALAAHDGATLAERLMRRGVPCAPVL
GLDAALDHPHVAHRRMKVELGRHRGIASPIKLGRTPATYRHAPPALNEHAAQVFAADNDDNDNDNDNRRT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=372, Percent_Identity=33.0645161290323, Blast_Score=231, Evalue=8e-61,
Organism=Homo sapiens, GI300863124, Length=325, Percent_Identity=35.6923076923077, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI13376042, Length=325, Percent_Identity=32.6153846153846, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI300863126, Length=372, Percent_Identity=29.3010752688172, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI266456254, Length=199, Percent_Identity=34.6733668341709, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI42794625, Length=199, Percent_Identity=34.6733668341709, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=34.6733668341709, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=34.6733668341709, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=36.1111111111111, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=36.1111111111111, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI87082093, Length=354, Percent_Identity=38.7005649717514, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1788717, Length=398, Percent_Identity=27.3869346733668, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1786222, Length=337, Percent_Identity=25.2225519287834, Blast_Score=89, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=264, Percent_Identity=25.7575757575758, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=205, Percent_Identity=26.8292682926829, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648431, Length=380, Percent_Identity=37.1052631578947, Blast_Score=238, Evalue=5e-63,
Organism=Drosophila melanogaster, GI24585488, Length=203, Percent_Identity=32.0197044334975, Blast_Score=97, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41850; Mature: 41719

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEHEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDT
CCCCCCCCHHHCCHHEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
ASYFLGVNRNKLGIALDLTQPADRERLLGLLEHADALVENFKIGTMERWGLGFDALHARF
CEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCC
PRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEAGGAPLRVGVPIVDLVTGLNA
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHH
ALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGNAPVRTGNAHPNITPYD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCEECCCCCCCCCCCC
SFPTAGVDIFLAVGNNGQFAALCDVLGTRDWLADPRFADNRARSQHRAALRTLLETALAA
CCCCCCEEEEEEECCCCCCHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HDGATLAERLMRRGVPCAPVLGLDAALDHPHVAHRRMKVELGRHRGIASPIKLGRTPATY
CCCHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
RHAPPALNEHAAQVFAADNDDNDNDNDNRRT
CCCCCCCCHHHHEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEHEQQGALAGLRIIDLSRVLGGPYATQILADHGAEVIKVEPPSGDETRTWGPPFDGDT
CCCCCCCHHHCCHHEEHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC
ASYFLGVNRNKLGIALDLTQPADRERLLGLLEHADALVENFKIGTMERWGLGFDALHARF
CEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCC
PRLVYCRVSGFGADGPLGGLPGYDAAVQALAGLMSVNGEAGGAPLRVGVPIVDLVTGLNA
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHH
ALGVLMALRERDASGRGQFVESTLFDCALSILHPHTPNFFHSGNAPVRTGNAHPNITPYD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCEECCCCCCCCCCCC
SFPTAGVDIFLAVGNNGQFAALCDVLGTRDWLADPRFADNRARSQHRAALRTLLETALAA
CCCCCCEEEEEEECCCCCCHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HDGATLAERLMRRGVPCAPVLGLDAALDHPHVAHRRMKVELGRHRGIASPIKLGRTPATY
CCCHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
RHAPPALNEHAAQVFAADNDDNDNDNDNRRT
CCCCCCCCHHHHEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]