Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is flbA [H]
Identifier: 116689683
GI number: 116689683
Start: 1847264
End: 1848772
Strand: Direct
Name: flbA [H]
Synonym: Bcen2424_1661
Alternate gene names: 116689683
Gene position: 1847264-1848772 (Clockwise)
Preceding gene: 116689682
Following gene: 116689684
Centisome position: 53.02
GC content: 67.33
Gene sequence:
>1509_bases ATGCAACCCCACCGCGACACTCTTCCGATGGACGATGCGGCCGTCACGCCGGTCAGGGAACACTACGTACAGGGCCGATT CGACTCCGCGATCCAGGCGGCGGAATCGCTCCTCGCGCAGCACGGCGATCACGGTGAATTGCTGAACCTCGCGGGCGTGT GCCATTTGAAGCTCGGCAACCTCGTCGCCGCCGAGGCGTGCCTCGAGCGGGCAGCGCACGCGGCGCCCCGGTCGGCCGAT ATCGACAACAACCTGGGCGTGCTCTATCAGTCGAGCGGGCGGGATGCCGACGCCGAGCGGGCGTTCGTGCGTGCCGTTTC GAAAGCACCGGGCCACGGCCAGGCGCACCTCAATCTCGGCATGTTGTTGCGGTCCAGGCATCGTCTGGAAGAGGCGGAAC GGGCGATCCGGATCGCCGTCGAACAGACGCCCGGCGATCATGCGGCGCTGAACGCGCTCGGCCTGGTGTTGAAGGACCTG GGCCGCTACGACGAAGCCGAAGCGGCCTATCGGCAGGCGCTGGCGCTCGAGCCCGGGCGTGCCGAATACCGGCTCAATCT GGCGAATGTGCTGCTGCACCGGAACGACTGGATCGCGGGGTTGCCGCTCTTCGAAGCGCGTCACGCCCCCGATCTCAACG GCGCATTTTCCGACGCGCCCGCCGTATCGTTCCCGCAGTGGCAGGGCGAGCCGATCGACGGCGCGTCGCTGCTGATCTGG CCGGAACAGGGGCACGGCGACCAGATCCAGCTGGTCCGCTATGTCAAAAAACTCCGGATGCTCGGGGCGAAACGGATCAC GCTGGTGTGCTCGGCCGCGACGCAGCGGCTGTTCGCGACGCTCCCCGAAGCGGATGCCGTCGTGGCGCGCGACAGGTTCG ATCCGGCCGCCTGCCCGCGTCACGATTTCTGGACTTATGTGTGGAGTATTCCCGTCAATCTGCGGGAATCGCCGGCGTCC ATTCCGGCCACGCTGCCTTATCTGCACGCGCCTCGGCATGCGGCGTCGAAATGGGACCGGCTGATGCCCAAAGGGCGCCT GCGCGTCGGCCTGGTGTGGCAAGGCAATCCCGGTCACGCGAACGACCGCGTGCGCTCGCTGCCCGGCCTGCAGACGCTCG CGCCGCTGTGGGACATCGACGGCGTCACGTTCGTCAGTCTTCAGAAGGGCGCGAACGAAGCCGATCTGCGTGCCGGAATC GGCGATCGCTTCATCGTCAATCTGGGCAACCGGACCACCGATTTCGCCGATGTCGCCGCGATCGTCGCGCGGCTCGATCT CGTCATCGGCGTCGATACCGCCGTGATGCACCTGAGCGCGGTGCTCGGCAAGCCCGCGTGGATTCTGCTGTCGAACGTGG GCACGGACTGGCGCTGGAGCGGCGCGGGCACGACTTCCGTGTGGTACCCGGACGTCGTCACGCTGTTTCGGCAGGCGGCG ACGGAAACGGACTGGTCCGGCGTGGTCGCGCGCGTTTCGCAGGCGTTGTCCGCGATGCGTGCGACATAG
Upstream 100 bases:
>100_bases CGCGTCGCAGCTCGACCGGTTTCTGGCGCGGCACGCTCCGCGCTGACGCCCGAATTTGCCGACGTTGCACGTTGCGCCGA CCGCGACGATCATTCCGTCC
Downstream 100 bases:
>100_bases TCGGAGATGCCGCTACAAGGCCGCGCCAGCCTCTTTCGCGCGGTTCCGGCGTCGACACGTCTGGAAGGGATGGCCGCCGG GTCTGCGTCGCTCATGTTGC
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MQPHRDTLPMDDAAVTPVREHYVQGRFDSAIQAAESLLAQHGDHGELLNLAGVCHLKLGNLVAAEACLERAAHAAPRSAD IDNNLGVLYQSSGRDADAERAFVRAVSKAPGHGQAHLNLGMLLRSRHRLEEAERAIRIAVEQTPGDHAALNALGLVLKDL GRYDEAEAAYRQALALEPGRAEYRLNLANVLLHRNDWIAGLPLFEARHAPDLNGAFSDAPAVSFPQWQGEPIDGASLLIW PEQGHGDQIQLVRYVKKLRMLGAKRITLVCSAATQRLFATLPEADAVVARDRFDPAACPRHDFWTYVWSIPVNLRESPAS IPATLPYLHAPRHAASKWDRLMPKGRLRVGLVWQGNPGHANDRVRSLPGLQTLAPLWDIDGVTFVSLQKGANEADLRAGI GDRFIVNLGNRTTDFADVAAIVARLDLVIGVDTAVMHLSAVLGKPAWILLSNVGTDWRWSGAGTTSVWYPDVVTLFRQAA TETDWSGVVARVSQALSAMRAT
Sequences:
>Translated_502_residues MQPHRDTLPMDDAAVTPVREHYVQGRFDSAIQAAESLLAQHGDHGELLNLAGVCHLKLGNLVAAEACLERAAHAAPRSAD IDNNLGVLYQSSGRDADAERAFVRAVSKAPGHGQAHLNLGMLLRSRHRLEEAERAIRIAVEQTPGDHAALNALGLVLKDL GRYDEAEAAYRQALALEPGRAEYRLNLANVLLHRNDWIAGLPLFEARHAPDLNGAFSDAPAVSFPQWQGEPIDGASLLIW PEQGHGDQIQLVRYVKKLRMLGAKRITLVCSAATQRLFATLPEADAVVARDRFDPAACPRHDFWTYVWSIPVNLRESPAS IPATLPYLHAPRHAASKWDRLMPKGRLRVGLVWQGNPGHANDRVRSLPGLQTLAPLWDIDGVTFVSLQKGANEADLRAGI GDRFIVNLGNRTTDFADVAAIVARLDLVIGVDTAVMHLSAVLGKPAWILLSNVGTDWRWSGAGTTSVWYPDVVTLFRQAA TETDWSGVVARVSQALSAMRAT >Mature_502_residues MQPHRDTLPMDDAAVTPVREHYVQGRFDSAIQAAESLLAQHGDHGELLNLAGVCHLKLGNLVAAEACLERAAHAAPRSAD IDNNLGVLYQSSGRDADAERAFVRAVSKAPGHGQAHLNLGMLLRSRHRLEEAERAIRIAVEQTPGDHAALNALGLVLKDL GRYDEAEAAYRQALALEPGRAEYRLNLANVLLHRNDWIAGLPLFEARHAPDLNGAFSDAPAVSFPQWQGEPIDGASLLIW PEQGHGDQIQLVRYVKKLRMLGAKRITLVCSAATQRLFATLPEADAVVARDRFDPAACPRHDFWTYVWSIPVNLRESPAS IPATLPYLHAPRHAASKWDRLMPKGRLRVGLVWQGNPGHANDRVRSLPGLQTLAPLWDIDGVTFVSLQKGANEADLRAGI GDRFIVNLGNRTTDFADVAAIVARLDLVIGVDTAVMHLSAVLGKPAWILLSNVGTDWRWSGAGTTSVWYPDVVTLFRQAA TETDWSGVVARVSQALSAMRAT
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI301336134, Length=128, Percent_Identity=35.15625, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI83415184, Length=128, Percent_Identity=35.15625, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI118766328, Length=143, Percent_Identity=34.965034965035, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI118766330, Length=143, Percent_Identity=34.965034965035, Blast_Score=67, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115532692, Length=171, Percent_Identity=29.2397660818713, Blast_Score=68, Evalue=9e-12, Organism=Caenorhabditis elegans, GI115532690, Length=171, Percent_Identity=29.8245614035088, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24647123, Length=149, Percent_Identity=30.8724832214765, Blast_Score=69, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54743; Mature: 54743
Theoretical pI: Translated: 7.03; Mature: 7.03
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPHRDTLPMDDAAVTPVREHYVQGRFDSAIQAAESLLAQHGDHGELLNLAGVCHLKLGN CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHCEEEEEHHH LVAAEACLERAAHAAPRSADIDNNLGVLYQSSGRDADAERAFVRAVSKAPGHGQAHLNLG HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEHHHH MLLRSRHRLEEAERAIRIAVEQTPGDHAALNALGLVLKDLGRYDEAEAAYRQALALEPGR HHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC AEYRLNLANVLLHRNDWIAGLPLFEARHAPDLNGAFSDAPAVSFPQWQGEPIDGASLLIW CCEEEEHHHHHEECCCCEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE PEQGHGDQIQLVRYVKKLRMLGAKRITLVCSAATQRLFATLPEADAVVARDRFDPAACPR CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC HDFWTYVWSIPVNLRESPASIPATLPYLHAPRHAASKWDRLMPKGRLRVGLVWQGNPGHA CCCEEEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCC NDRVRSLPGLQTLAPLWDIDGVTFVSLQKGANEADLRAGIGDRFIVNLGNRTTDFADVAA CCHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHH IVARLDLVIGVDTAVMHLSAVLGKPAWILLSNVGTDWRWSGAGTTSVWYPDVVTLFRQAA HHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCCEECHHHHHHHHHHH TETDWSGVVARVSQALSAMRAT CCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQPHRDTLPMDDAAVTPVREHYVQGRFDSAIQAAESLLAQHGDHGELLNLAGVCHLKLGN CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHCEEEEEHHH LVAAEACLERAAHAAPRSADIDNNLGVLYQSSGRDADAERAFVRAVSKAPGHGQAHLNLG HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEHHHH MLLRSRHRLEEAERAIRIAVEQTPGDHAALNALGLVLKDLGRYDEAEAAYRQALALEPGR HHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC AEYRLNLANVLLHRNDWIAGLPLFEARHAPDLNGAFSDAPAVSFPQWQGEPIDGASLLIW CCEEEEHHHHHEECCCCEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE PEQGHGDQIQLVRYVKKLRMLGAKRITLVCSAATQRLFATLPEADAVVARDRFDPAACPR CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC HDFWTYVWSIPVNLRESPASIPATLPYLHAPRHAASKWDRLMPKGRLRVGLVWQGNPGHA CCCEEEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCC NDRVRSLPGLQTLAPLWDIDGVTFVSLQKGANEADLRAGIGDRFIVNLGNRTTDFADVAA CCHHHHCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCEEEEECCCCCCHHHHHHH IVARLDLVIGVDTAVMHLSAVLGKPAWILLSNVGTDWRWSGAGTTSVWYPDVVTLFRQAA HHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCCEECHHHHHHHHHHH TETDWSGVVARVSQALSAMRAT CCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9748431; 11259647; 1699845 [H]