Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689670
Identifier: 116689670
GI number: 116689670
Start: 1830560
End: 1831630
Strand: Reverse
Name: 116689670
Synonym: Bcen2424_1648
Alternate gene names: NA
Gene position: 1831630-1830560 (Counterclockwise)
Preceding gene: 116689673
Following gene: 116689669
Centisome position: 52.57
GC content: 71.43
Gene sequence:
>1071_bases ATGCCGGCGAACGTCCCCCTCCCCCTATCGGAACAGCATGTGCTCGACGAGGCCTGTGCCGCGTTCGGACGCTCGACCCG GCGCTTCGCTGCGCGGCCCGTGCGTGTGCCGGCGGCGTACCAGGCGCGCGCCGACGCAATGATCCGCTTCGACATCGCCG GGCAGAGCTTCGAGATGCCGGCGGCCGTGAGCGTCGGCGTCGAATCGCTGCAGGCTGCGCTGGCGGCGCTGCGTCGCCGC GGCGGCACGTCGGCGCCGGGCGAGCGGCCACTTATGCTGGTCGCGCCTTATTTTTCTGCCGAACTGGCCGCCCGCCTGAT CGAGCACGACATCCCGTTTCTCGATACCGCCGGCAATGCGAGCCTGATCCAGCCGGAGGCCACCCTGATGATCGCCGGCC GGCCGAAACCTGCGCGCACCCCGCGCCGTCAGGCGTCACGCGCGACCACGCCGAAGGGGCTCGCCGTGATGTTCGCGCTC GCGACGCAGCCGGGCCTCGTCGCGCAGCCGTACCGGGCGATCGCCGCCGCGTCGGGCGTCGCGCTCGGCACGGTCAACCT CGCGATGGACGACCTGATCGCGCGCGGCCTCGTCGCGCAGCGGCGCAACGGCGAACGGCTGATGCCCGACTGGCCGCGCT TCCTGCAGGAATGGGTCGCGCTGTACCCGAGCCGCCTGCGCGCGAAACTGCCGGCCCGGCGGTTTGCCGCGATCGCACCC GACTGGTGGCGCGGCTTCGATTTCGCCGCGTTCGATGCGCGGCTCGGCGGCGAAGCGGCGGCCGATCTGCTCACGCACGA CCTGAAGCCGGCAGCGATCACCGTCTATACGCACGGCGCCATGTCGAATCGCCTGCTGCTGCAAGCCCGCCTGCGCCCGG ACGAGCATGGCGACGTCGAGCTGCTCGAAGCGTTCTGGCCGCCGTCGCCGGCGCTCGACTGGCGCGAGCAGGATGTTCCG CTCGTGCCGCCGCTGTTGGTCTACGCGGATCTCGTCTCGTCCGGAGACAGCCGCAATCTTGCCGCCGCCGAACACATCCA TGACCGATACCTCGCCCACCCGCCCGCTTGA
Upstream 100 bases:
>100_bases AATTCCTTTTCATCAAAGGGTTGAGAGCATTTGTTCATTTTTTGACGGTTGTACATTTTTTGTGTACGCTGACAAAACAG TGAACAAGCGATCCTCCGTG
Downstream 100 bases:
>100_bases AATCGACGCGCGCCGGCCGCTCGAGCCGGCGGCAGTCGCGCTGCTGCGGGCGGTCGGCTCGGCCTGCGCCCGGCTCGACG CGGCATTCGTCGTGGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MPANVPLPLSEQHVLDEACAAFGRSTRRFAARPVRVPAAYQARADAMIRFDIAGQSFEMPAAVSVGVESLQAALAALRRR GGTSAPGERPLMLVAPYFSAELAARLIEHDIPFLDTAGNASLIQPEATLMIAGRPKPARTPRRQASRATTPKGLAVMFAL ATQPGLVAQPYRAIAAASGVALGTVNLAMDDLIARGLVAQRRNGERLMPDWPRFLQEWVALYPSRLRAKLPARRFAAIAP DWWRGFDFAAFDARLGGEAAADLLTHDLKPAAITVYTHGAMSNRLLLQARLRPDEHGDVELLEAFWPPSPALDWREQDVP LVPPLLVYADLVSSGDSRNLAAAEHIHDRYLAHPPA
Sequences:
>Translated_356_residues MPANVPLPLSEQHVLDEACAAFGRSTRRFAARPVRVPAAYQARADAMIRFDIAGQSFEMPAAVSVGVESLQAALAALRRR GGTSAPGERPLMLVAPYFSAELAARLIEHDIPFLDTAGNASLIQPEATLMIAGRPKPARTPRRQASRATTPKGLAVMFAL ATQPGLVAQPYRAIAAASGVALGTVNLAMDDLIARGLVAQRRNGERLMPDWPRFLQEWVALYPSRLRAKLPARRFAAIAP DWWRGFDFAAFDARLGGEAAADLLTHDLKPAAITVYTHGAMSNRLLLQARLRPDEHGDVELLEAFWPPSPALDWREQDVP LVPPLLVYADLVSSGDSRNLAAAEHIHDRYLAHPPA >Mature_355_residues PANVPLPLSEQHVLDEACAAFGRSTRRFAARPVRVPAAYQARADAMIRFDIAGQSFEMPAAVSVGVESLQAALAALRRRG GTSAPGERPLMLVAPYFSAELAARLIEHDIPFLDTAGNASLIQPEATLMIAGRPKPARTPRRQASRATTPKGLAVMFALA TQPGLVAQPYRAIAAASGVALGTVNLAMDDLIARGLVAQRRNGERLMPDWPRFLQEWVALYPSRLRAKLPARRFAAIAPD WWRGFDFAAFDARLGGEAAADLLTHDLKPAAITVYTHGAMSNRLLLQARLRPDEHGDVELLEAFWPPSPALDWREQDVPL VPPLLVYADLVSSGDSRNLAAAEHIHDRYLAHPPA
Specific function: Unknown
COG id: COG4861
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38668; Mature: 38537
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPANVPLPLSEQHVLDEACAAFGRSTRRFAARPVRVPAAYQARADAMIRFDIAGQSFEMP CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCCCCCC AAVSVGVESLQAALAALRRRGGTSAPGERPLMLVAPYFSAELAARLIEHDIPFLDTAGNA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCEECCCCC SLIQPEATLMIAGRPKPARTPRRQASRATTPKGLAVMFALATQPGLVAQPYRAIAAASGV CEECCCEEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEHHCCCCCCCCHHHHHHHHCCC ALGTVNLAMDDLIARGLVAQRRNGERLMPDWPRFLQEWVALYPSRLRAKLPARRFAAIAP EEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCHHHHHHCCC DWWRGFDFAAFDARLGGEAAADLLTHDLKPAAITVYTHGAMSNRLLLQARLRPDEHGDVE HHHCCCCCEEHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHH LLEAFWPPSPALDWREQDVPLVPPLLVYADLVSSGDSRNLAAAEHIHDRYLAHPPA HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure PANVPLPLSEQHVLDEACAAFGRSTRRFAARPVRVPAAYQARADAMIRFDIAGQSFEMP CCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCCCCCC AAVSVGVESLQAALAALRRRGGTSAPGERPLMLVAPYFSAELAARLIEHDIPFLDTAGNA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCEECCCCC SLIQPEATLMIAGRPKPARTPRRQASRATTPKGLAVMFALATQPGLVAQPYRAIAAASGV CEECCCEEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEEHHCCCCCCCCHHHHHHHHCCC ALGTVNLAMDDLIARGLVAQRRNGERLMPDWPRFLQEWVALYPSRLRAKLPARRFAAIAP EEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCHHHHHHCCC DWWRGFDFAAFDARLGGEAAADLLTHDLKPAAITVYTHGAMSNRLLLQARLRPDEHGDVE HHHCCCCCEEHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHH LLEAFWPPSPALDWREQDVPLVPPLLVYADLVSSGDSRNLAAAEHIHDRYLAHPPA HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA