Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689669
Identifier: 116689669
GI number: 116689669
Start: 1829686
End: 1830591
Strand: Reverse
Name: 116689669
Synonym: Bcen2424_1647
Alternate gene names: NA
Gene position: 1830591-1829686 (Counterclockwise)
Preceding gene: 116689670
Following gene: 116689661
Centisome position: 52.54
GC content: 69.43
Gene sequence:
>906_bases ATGACCGATACCTCGCCCACCCGCCCGCTTGAAATCGACGCGCGCCGGCCGCTCGAGCCGGCGGCAGTCGCGCTGCTGCG GGCGGTCGGCTCGGCCTGCGCCCGGCTCGACGCGGCATTCGTCGTGGCCGGCGCGACCGCGCGCGACATCCTGATGTGGC ATGTCCACGGCATCCGTCCGGTGCGTGCGACGCGGGACGTCGACGTCGCTGTGTGCGCGGTCAACTGGCCGTTTCACGAG CGGCTCGTCGATGCGCTCGTCGCGACCGGGCAATTCGCCCGCGCGCCGAAGCATCGGCAGAAACTGCTGTTCGACAGCGG CTCGCCGGGGTTTCGCACCGAACTCGATCTGGTGCCGTTCGGGCCGCTCGAAACACCGCCCGGCGAAATCGCATGGCCGC CGGGCGGCGACTTCGTGCTGAACGTGCTGGGGTTTCAGGAGGCGGTCGATACGGCGCTCGCCGTGTCGATCGGCGCCGGC ATCACGGTGCCGGTGGCGAGCCTGCCGGCGCTCGCGCTGCTGAAGCTGCTCGCGTGGAAGGACCGGCGCGCGCGCCAGAA CAGCGACGCATACGACCTGCTGTTCCTGCTCACGCATTTTCACGATGCGGGCAATCGCGAGCGCATCTGGGACGTTGCGC CCGACCTGATCGAACAACATGGCTTCCAGCCGGAGCTGGCGGCAGCGGCGCTGCTCGCACGCGACGCGAAGCAGATTGCG TCACCGCACACGCACGATGCGATCCGCGCACTGCTATCCGACGACGCGACTTACGCGATGCTCGGGCAGGATCTGCAGGC CCGCGCGTTCGCGCTGTTGCCCGGGGAATTCAACGACGACGCGGAACGGTATCTCGATGCGTTCCGCGGCGGCTTCCTCG CGGGTCCGCTCGTCCATCGGGCGTGA
Upstream 100 bases:
>100_bases TGGCGCGAGCAGGATGTTCCGCTCGTGCCGCCGCTGTTGGTCTACGCGGATCTCGTCTCGTCCGGAGACAGCCGCAATCT TGCCGCCGCCGAACACATCC
Downstream 100 bases:
>100_bases CATCAGCCAGTCACGCCGTTTTCACCGTCCTGCCCGGGTCGGCTCGACGAGGAAGCTGGAATCGGCGAGCGGCTCGTTTG CAAAGGACAACCACGTCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTDTSPTRPLEIDARRPLEPAAVALLRAVGSACARLDAAFVVAGATARDILMWHVHGIRPVRATRDVDVAVCAVNWPFHE RLVDALVATGQFARAPKHRQKLLFDSGSPGFRTELDLVPFGPLETPPGEIAWPPGGDFVLNVLGFQEAVDTALAVSIGAG ITVPVASLPALALLKLLAWKDRRARQNSDAYDLLFLLTHFHDAGNRERIWDVAPDLIEQHGFQPELAAAALLARDAKQIA SPHTHDAIRALLSDDATYAMLGQDLQARAFALLPGEFNDDAERYLDAFRGGFLAGPLVHRA
Sequences:
>Translated_301_residues MTDTSPTRPLEIDARRPLEPAAVALLRAVGSACARLDAAFVVAGATARDILMWHVHGIRPVRATRDVDVAVCAVNWPFHE RLVDALVATGQFARAPKHRQKLLFDSGSPGFRTELDLVPFGPLETPPGEIAWPPGGDFVLNVLGFQEAVDTALAVSIGAG ITVPVASLPALALLKLLAWKDRRARQNSDAYDLLFLLTHFHDAGNRERIWDVAPDLIEQHGFQPELAAAALLARDAKQIA SPHTHDAIRALLSDDATYAMLGQDLQARAFALLPGEFNDDAERYLDAFRGGFLAGPLVHRA >Mature_300_residues TDTSPTRPLEIDARRPLEPAAVALLRAVGSACARLDAAFVVAGATARDILMWHVHGIRPVRATRDVDVAVCAVNWPFHER LVDALVATGQFARAPKHRQKLLFDSGSPGFRTELDLVPFGPLETPPGEIAWPPGGDFVLNVLGFQEAVDTALAVSIGAGI TVPVASLPALALLKLLAWKDRRARQNSDAYDLLFLLTHFHDAGNRERIWDVAPDLIEQHGFQPELAAAALLARDAKQIAS PHTHDAIRALLSDDATYAMLGQDLQARAFALLPGEFNDDAERYLDAFRGGFLAGPLVHRA
Specific function: Unknown
COG id: COG4849
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32617; Mature: 32485
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTSPTRPLEIDARRPLEPAAVALLRAVGSACARLDAAFVVAGATARDILMWHVHGIRP CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCC VRATRDVDVAVCAVNWPFHERLVDALVATGQFARAPKHRQKLLFDSGSPGFRTELDLVPF CCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHCCCHHHHHHEECCCCCCCCEEECEECC GPLETPPGEIAWPPGGDFVLNVLGFQEAVDTALAVSIGAGITVPVASLPALALLKLLAWK CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHH DRRARQNSDAYDLLFLLTHFHDAGNRERIWDVAPDLIEQHGFQPELAAAALLARDAKQIA HHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC SPHTHDAIRALLSDDATYAMLGQDLQARAFALLPGEFNDDAERYLDAFRGGFLAGPLVHR CCCHHHHHHHHHCCCCHHHHHCCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHC A C >Mature Secondary Structure TDTSPTRPLEIDARRPLEPAAVALLRAVGSACARLDAAFVVAGATARDILMWHVHGIRP CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCC VRATRDVDVAVCAVNWPFHERLVDALVATGQFARAPKHRQKLLFDSGSPGFRTELDLVPF CCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHHCCCHHHHHHEECCCCCCCCEEECEECC GPLETPPGEIAWPPGGDFVLNVLGFQEAVDTALAVSIGAGITVPVASLPALALLKLLAWK CCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHH DRRARQNSDAYDLLFLLTHFHDAGNRERIWDVAPDLIEQHGFQPELAAAALLARDAKQIA HHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC SPHTHDAIRALLSDDATYAMLGQDLQARAFALLPGEFNDDAERYLDAFRGGFLAGPLVHR CCCHHHHHHHHHCCCCHHHHHCCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHC A C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA