Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is ybgO [C]

Identifier: 116689651

GI number: 116689651

Start: 1797280

End: 1798305

Strand: Direct

Name: ybgO [C]

Synonym: Bcen2424_1629

Alternate gene names: 116689651

Gene position: 1797280-1798305 (Clockwise)

Preceding gene: 116689650

Following gene: 116689654

Centisome position: 51.59

GC content: 63.65

Gene sequence:

>1026_bases
ATGAGCGGGGCCGCGAGACAACGCAACGCACCGCTCGCGGCGTGGCTGCGCTGGGTCGTCCTGGCGATGCTGCTCGCGGC
GGTTCAGCCCGCGTGGGCGCTGCGCTGCCTGACCAACAGCGGCGCGACGTCGTTGACCGAGCCGATCGGCGGCGTGGCGT
CGTATCCGACCGACGCGCCGGACGGCTACGTGATCTGGGTGTCGCCGGTACGCACGACGTCGGGGTATTGCTACAAGGAC
CTGGGTGACGCCGGCAGCCTGAAGGTCGTCGACAACATTTACTTCTACGCGAATCCGAATCGCACGGACCCCGCCGCATG
GGGGCTCGAGATCGGCATCCGCTACAAGGGCGTCGATTATTTCGACAAGACCAGCAATCGCGGCGGCGGGGTGTTTACCG
GATATTCGGTGCCGCCGTGCAGCAGGTACGACTTCGACCGCGGGCGTTGCCAGCGGACGAGCATCAGCATCGACTATCAG
GTCGTCGTGCGCAAAAGAGGCAACTGGGTCCAGCCGCCGAGCGATATCTATACGGTGTTCCAGTTCGACGGCGAGTTCGG
GCTGAATGCGTTCGGCACGAGCTTCCAGTACCGTCTGAGCGGCCTGCGCAACCTCAAGCCGACGCCGTGCTTCGTCGACG
TGCTCGTGACGCCCGAACCGGGCATCGTCAATTTCGGGCAGGTGCAGGCGGTCGGCAACGGCTTCCTGCCGGCGGTGCCG
CGCAAGCGCTTTTCGCTGTCGCTGACGAAGAAGTGCAACGTCGCGGTGCGGGTGGACGGGTACTTCGAAACGAGCTATCC
GGTTCAGAACGGCTTGCTGGTTCCCGCGAAGGACAGCAATTTCGGTATCGGCATCGAGGACAGCCAGGGCAAGGCGATTC
CGTTCAACGAACAGTTCAACCTCGCGCAATTCCCGTCCAACGTCATGAACCAGAGCGTATTGATGGACGCGGTGCTGAAG
TCGTTCGGGCCGCCGAAGATCGGCCGGTTCGACGCGACGGCGACGATCCGCTTGTTCATCTATTGA

Upstream 100 bases:

>100_bases
CGACGCCGTCGACGCTGTTCGTCACGCACATCGACGACTACGGCGGCCAGGTGGCGGTCGAGTATGCGTGCGAGGCCGGT
GCGTGCAAGAGCGTGAAGAA

Downstream 100 bases:

>100_bases
TATCGAGGGCGATGCCCGGGCCACATCCATCCGCGTGGCCCGCCATCCGGGGAACGGATGGCGCGGCGTGTTCGCGAAAG
CAGGATCGGCTTCCACCGGC

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSGAARQRNAPLAAWLRWVVLAMLLAAVQPAWALRCLTNSGATSLTEPIGGVASYPTDAPDGYVIWVSPVRTTSGYCYKD
LGDAGSLKVVDNIYFYANPNRTDPAAWGLEIGIRYKGVDYFDKTSNRGGGVFTGYSVPPCSRYDFDRGRCQRTSISIDYQ
VVVRKRGNWVQPPSDIYTVFQFDGEFGLNAFGTSFQYRLSGLRNLKPTPCFVDVLVTPEPGIVNFGQVQAVGNGFLPAVP
RKRFSLSLTKKCNVAVRVDGYFETSYPVQNGLLVPAKDSNFGIGIEDSQGKAIPFNEQFNLAQFPSNVMNQSVLMDAVLK
SFGPPKIGRFDATATIRLFIY

Sequences:

>Translated_341_residues
MSGAARQRNAPLAAWLRWVVLAMLLAAVQPAWALRCLTNSGATSLTEPIGGVASYPTDAPDGYVIWVSPVRTTSGYCYKD
LGDAGSLKVVDNIYFYANPNRTDPAAWGLEIGIRYKGVDYFDKTSNRGGGVFTGYSVPPCSRYDFDRGRCQRTSISIDYQ
VVVRKRGNWVQPPSDIYTVFQFDGEFGLNAFGTSFQYRLSGLRNLKPTPCFVDVLVTPEPGIVNFGQVQAVGNGFLPAVP
RKRFSLSLTKKCNVAVRVDGYFETSYPVQNGLLVPAKDSNFGIGIEDSQGKAIPFNEQFNLAQFPSNVMNQSVLMDAVLK
SFGPPKIGRFDATATIRLFIY
>Mature_340_residues
SGAARQRNAPLAAWLRWVVLAMLLAAVQPAWALRCLTNSGATSLTEPIGGVASYPTDAPDGYVIWVSPVRTTSGYCYKDL
GDAGSLKVVDNIYFYANPNRTDPAAWGLEIGIRYKGVDYFDKTSNRGGGVFTGYSVPPCSRYDFDRGRCQRTSISIDYQV
VVRKRGNWVQPPSDIYTVFQFDGEFGLNAFGTSFQYRLSGLRNLKPTPCFVDVLVTPEPGIVNFGQVQAVGNGFLPAVPR
KRFSLSLTKKCNVAVRVDGYFETSYPVQNGLLVPAKDSNFGIGIEDSQGKAIPFNEQFNLAQFPSNVMNQSVLMDAVLKS
FGPPKIGRFDATATIRLFIY

Specific function: May Be Involved In A Fimbrial System Chaperoned By Ybgp And Exported By Ybgq. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37462; Mature: 37331

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAARQRNAPLAAWLRWVVLAMLLAAVQPAWALRCLTNSGATSLTEPIGGVASYPTDAP
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHCCCCCCCCCCCCC
DGYVIWVSPVRTTSGYCYKDLGDAGSLKVVDNIYFYANPNRTDPAAWGLEIGIRYKGVDY
CCEEEEEEECCCCCCCEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCH
FDKTSNRGGGVFTGYSVPPCSRYDFDRGRCQRTSISIDYQVVVRKRGNWVQPPSDIYTVF
HHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCHHEEEEE
QFDGEFGLNAFGTSFQYRLSGLRNLKPTPCFVDVLVTPEPGIVNFGQVQAVGNGFLPAVP
EECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCEEEECCCCCCCCCC
RKRFSLSLTKKCNVAVRVDGYFETSYPVQNGLLVPAKDSNFGIGIEDSQGKAIPFNEQFN
CCCEEEEEECCCCEEEEECCEEECCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCC
LAQFPSNVMNQSVLMDAVLKSFGPPKIGRFDATATIRLFIY
HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
SGAARQRNAPLAAWLRWVVLAMLLAAVQPAWALRCLTNSGATSLTEPIGGVASYPTDAP
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCHHHHCCCCCCCCCCCCC
DGYVIWVSPVRTTSGYCYKDLGDAGSLKVVDNIYFYANPNRTDPAAWGLEIGIRYKGVDY
CCEEEEEEECCCCCCCEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCH
FDKTSNRGGGVFTGYSVPPCSRYDFDRGRCQRTSISIDYQVVVRKRGNWVQPPSDIYTVF
HHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCHHEEEEE
QFDGEFGLNAFGTSFQYRLSGLRNLKPTPCFVDVLVTPEPGIVNFGQVQAVGNGFLPAVP
EECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCEEECCEEEECCCCCCCCCC
RKRFSLSLTKKCNVAVRVDGYFETSYPVQNGLLVPAKDSNFGIGIEDSQGKAIPFNEQFN
CCCEEEEEECCCCEEEEECCEEECCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCC
LAQFPSNVMNQSVLMDAVLKSFGPPKIGRFDATATIRLFIY
HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA