Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is yxiE [H]
Identifier: 116689619
GI number: 116689619
Start: 1758080
End: 1758577
Strand: Direct
Name: yxiE [H]
Synonym: Bcen2424_1597
Alternate gene names: 116689619
Gene position: 1758080-1758577 (Clockwise)
Preceding gene: 116689616
Following gene: 116689623
Centisome position: 50.46
GC content: 59.84
Gene sequence:
>498_bases ATGGCTAGCTACAACAAGATTTTGCTGTGTTACGACGGCACGCTCGAAGGGCGCAAGGCGCTGCGTTACGGGGCCAATCT CGCAATGGACCTGAAGGCCGAAACGCATTTGCTGTCGGTCGTCGACATGCGTTCGAGCATTGCGCAAAGTGCAGGTTTGC TGACCGATGTCGCATGCGGACGCTTCGAGGAAACCGCGCGCGAAATCCTGCAGGAAGGCGTGAATTGGCTGCGCGAGCGC GGCGTGCAGGCCGAAGGCCATTTCGCATTCGGTTATCCGATCGACGAAATCGCGAATCTCGCGTCGGAATTGAAGGTCGA TCTCGTCGTCGTCGGCCACCGGTGCCGCAGCGGATTGTCGAGATGGTGGATGGGGTCGGGCAATACGCAACTGCTCGATC GCGTGAACTGCAGCATCCTGGTTGCGTGTTCGTCGGCGGAAGAGCAGAAGGCCGAAATTGCGCGCGAGCGTGAAGCGGCC ATCGCGAACGGCCAATGA
Upstream 100 bases:
>100_bases CGCGCCGTGCGGGGCGAATCAGCGTTTTCCATCCCTTGCGTCTTGAATTGCGGCGCACCATGATGAATGCGTAGGCTCGT TGTCGCGATAGGGAGGCTTC
Downstream 100 bases:
>100_bases TCTAAAAGCTGGGGGACCCCCTGACCACCCGACCGGCAATGCGTGACGGTCAGGCATCGCACTGCATCGGCAGTGCGCAC GTCGAGCACGGCCTGCTATG
Product: UspA domain-containing protein
Products: NA
Alternate protein names: USP YxiE [H]
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MASYNKILLCYDGTLEGRKALRYGANLAMDLKAETHLLSVVDMRSSIAQSAGLLTDVACGRFEETAREILQEGVNWLRER GVQAEGHFAFGYPIDEIANLASELKVDLVVVGHRCRSGLSRWWMGSGNTQLLDRVNCSILVACSSAEEQKAEIAREREAA IANGQ
Sequences:
>Translated_165_residues MASYNKILLCYDGTLEGRKALRYGANLAMDLKAETHLLSVVDMRSSIAQSAGLLTDVACGRFEETAREILQEGVNWLRER GVQAEGHFAFGYPIDEIANLASELKVDLVVVGHRCRSGLSRWWMGSGNTQLLDRVNCSILVACSSAEEQKAEIAREREAA IANGQ >Mature_164_residues ASYNKILLCYDGTLEGRKALRYGANLAMDLKAETHLLSVVDMRSSIAQSAGLLTDVACGRFEETAREILQEGVNWLRERG VQAEGHFAFGYPIDEIANLASELKVDLVVVGHRCRSGLSRWWMGSGNTQLLDRVNCSILVACSSAEEQKAEIAREREAAI ANGQ
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the universal stress protein A family [H]
Homologues:
None
Paralogues:
None
Copy number: 180 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 120 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014729 - InterPro: IPR006015 - InterPro: IPR006016 [H]
Pfam domain/function: PF00582 Usp [H]
EC number: NA
Molecular weight: Translated: 18118; Mature: 17987
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASYNKILLCYDGTLEGRKALRYGANLAMDLKAETHLLSVVDMRSSIAQSAGLLTDVACG CCCCCEEEEEECCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHC RFEETAREILQEGVNWLRERGVQAEGHFAFGYPIDEIANLASELKVDLVVVGHRCRSGLS CHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHEEECHHHHHHHH RWWMGSGNTQLLDRVNCSILVACSSAEEQKAEIAREREAAIANGQ HHCCCCCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ASYNKILLCYDGTLEGRKALRYGANLAMDLKAETHLLSVVDMRSSIAQSAGLLTDVACG CCCCEEEEEECCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHC RFEETAREILQEGVNWLRERGVQAEGHFAFGYPIDEIANLASELKVDLVVVGHRCRSGLS CHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHEEECHHHHHHHH RWWMGSGNTQLLDRVNCSILVACSSAEEQKAEIAREREAAIANGQ HHCCCCCCHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7704263; 9384377 [H]