Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689552
Identifier: 116689552
GI number: 116689552
Start: 1692416
End: 1693126
Strand: Direct
Name: 116689552
Synonym: Bcen2424_1530
Alternate gene names: NA
Gene position: 1692416-1693126 (Clockwise)
Preceding gene: 116689551
Following gene: 116689554
Centisome position: 48.58
GC content: 66.67
Gene sequence:
>711_bases ATGAGCCATATGACGGGGTTGGGGCGGGTGAGCGTATTGCTGCTCGCCATGGTGGGAGGCATGCAAGGCGCGTTCGCGCA GGGGCTGGCGGGCGGCGATCCGTCGGCGGTGCAGCAGGCGTCGGCGCCGGTGGCCGCGATTCCGGTGATCGATTCGCAGG CACAGACGTCGGTGCAGCCGCAGGCCGGCGAGACGACGGGGCCGAGCACGGTCGACGACTTGCAGCGCCAGATCCAGGCG CACTCGCTGACGGAAATGCGCACGAGCTACAACGGCAGCTACGGCGCCAGCCTGCTGTTCAACGTCAAGGATGGTGCGTA TTTCGTCGCGTTGTTCCAGCAGAAGGCGTTCTGGCGCGTGATCAAGACTTACGACGAAACGCGTGCGGAAGCGATCTATC GCGATTTCTCGCACCAGGCGGAGCGTCTGGCCGTCAACGAGTTGCGGGCGGCGAAGCTGGAATCGCAGAAGGCGCAAATG GACAAGCAGATCGAGGTCACGCAGGACCGCGCGCGGCGCCTGCAGGCGGACATCTCGATCGCCCGCCAGCAGCAGGCGGC GGTGGCGGATCGCCAGAAGAGCGTGCGGAGCGAAACGGCGGCATTGCAGGCGCAACAGGCTCAACTCCAGTCGCAACTGC GGGCGTTGCAGCAGCAGGTGCGTTCGCTGCAGCGCGAGGCTGACGCAGGCCTGCCGACGACGGCACGCTGA
Upstream 100 bases:
>100_bases ATATCAGATCTTCGACGAAGAGCCCGAGACCCGCGAAAGTGAGTAATTAATGAGATAAAATCGCGGTGAATTACAACGAC TCGGGCGGGAATAAAACTTC
Downstream 100 bases:
>100_bases ACCCGGTAACGACGGTGCGGCGACGTGCCGCGCCGGCCGTACAAGTGAAAAGGGCAAGCCGGTTGGCTTGCCCTTTTTGT TTTACTGGCCGTCCGGCACG
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Exported Lipoprotein; Molecular Chaperone; Exported Protein
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MSHMTGLGRVSVLLLAMVGGMQGAFAQGLAGGDPSAVQQASAPVAAIPVIDSQAQTSVQPQAGETTGPSTVDDLQRQIQA HSLTEMRTSYNGSYGASLLFNVKDGAYFVALFQQKAFWRVIKTYDETRAEAIYRDFSHQAERLAVNELRAAKLESQKAQM DKQIEVTQDRARRLQADISIARQQQAAVADRQKSVRSETAALQAQQAQLQSQLRALQQQVRSLQREADAGLPTTAR
Sequences:
>Translated_236_residues MSHMTGLGRVSVLLLAMVGGMQGAFAQGLAGGDPSAVQQASAPVAAIPVIDSQAQTSVQPQAGETTGPSTVDDLQRQIQA HSLTEMRTSYNGSYGASLLFNVKDGAYFVALFQQKAFWRVIKTYDETRAEAIYRDFSHQAERLAVNELRAAKLESQKAQM DKQIEVTQDRARRLQADISIARQQQAAVADRQKSVRSETAALQAQQAQLQSQLRALQQQVRSLQREADAGLPTTAR >Mature_235_residues SHMTGLGRVSVLLLAMVGGMQGAFAQGLAGGDPSAVQQASAPVAAIPVIDSQAQTSVQPQAGETTGPSTVDDLQRQIQAH SLTEMRTSYNGSYGASLLFNVKDGAYFVALFQQKAFWRVIKTYDETRAEAIYRDFSHQAERLAVNELRAAKLESQKAQMD KQIEVTQDRARRLQADISIARQQQAAVADRQKSVRSETAALQAQQAQLQSQLRALQQQVRSLQREADAGLPTTAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25701; Mature: 25570
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHMTGLGRVSVLLLAMVGGMQGAFAQGLAGGDPSAVQQASAPVAAIPVIDSQAQTSVQP CCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCHHHCCCC QAGETTGPSTVDDLQRQIQAHSLTEMRTSYNGSYGASLLFNVKDGAYFVALFQQKAFWRV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH IKTYDETRAEAIYRDFSHQAERLAVNELRAAKLESQKAQMDKQIEVTQDRARRLQADISI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARQQQAAVADRQKSVRSETAALQAQQAQLQSQLRALQQQVRSLQREADAGLPTTAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure SHMTGLGRVSVLLLAMVGGMQGAFAQGLAGGDPSAVQQASAPVAAIPVIDSQAQTSVQP CCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCHHHCCCC QAGETTGPSTVDDLQRQIQAHSLTEMRTSYNGSYGASLLFNVKDGAYFVALFQQKAFWRV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH IKTYDETRAEAIYRDFSHQAERLAVNELRAAKLESQKAQMDKQIEVTQDRARRLQADISI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARQQQAAVADRQKSVRSETAALQAQQAQLQSQLRALQQQVRSLQREADAGLPTTAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA