Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689491
Identifier: 116689491
GI number: 116689491
Start: 1623024
End: 1623581
Strand: Reverse
Name: 116689491
Synonym: Bcen2424_1469
Alternate gene names: NA
Gene position: 1623581-1623024 (Counterclockwise)
Preceding gene: 116689505
Following gene: 116689490
Centisome position: 46.6
GC content: 71.15
Gene sequence:
>558_bases ATGTCGATCCGCCTTCGTTCAGCCGCCCGCCCTGTCGCGCACGCCTTCGCGGCAGCCGCTTGCGTCGTAGCGCTCTGGCC CGCCGCCGCCCGTGCCGCCGATCTCGTCGCACCGCACAGCCTGACCGTCGCGGCAGGCTTGCCGGCCGCGCAGGCCCGCG CGCAAATCCTGGCCGCGCGCCGCTACGGCAGCTTCTGGAATACCGGCGACCCCGCGCTCGCCCGCGCGGCACTCGCCGAC GACTTCACCGACCGCACGCTGCCGCCCGGCCGCGAACAAGGCGCAGCAGGGCCGCTCGCGGCGTCCAGCACGATGCGCGG CGCGATCCCGGACCTGCGCTGCGACATCGAACAGATGATCGTCGCCGGCGACCGGGTCGTCGTGCACCTGCATTTCCGCG GGCATTTCACCGGGGCGTTCAACGGAACGGCCGGGCGCGGACAGGCGATCGACTTCATCGCGACCGATATCTACCGGATC GACCACGGCCGGATCGCGGAAAACTGGCATATCGAGGACAACCTGACGCTGATGCGTCAGCTCGGGCTCGTCGGCTGA
Upstream 100 bases:
>100_bases AGAATCCATTCGCTTCTTTCCCGTATTTGCATTCAGAACGGAAACCTACCATACCTGTTCCGCGTCGTCGCATGACGCTC TTCACAGGACCCTTGCAACC
Downstream 100 bases:
>100_bases CGGAGGGGACGATGACTCACGGTAACGACACGCCCGCGACGCCTCTGCCGCGTCGTACCTTCCTGGCCCAGGCCGGCGCC GGGCTCGCGGCCGGCGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 185; Mature: 184
Protein sequence:
>185_residues MSIRLRSAARPVAHAFAAAACVVALWPAAARAADLVAPHSLTVAAGLPAAQARAQILAARRYGSFWNTGDPALARAALAD DFTDRTLPPGREQGAAGPLAASSTMRGAIPDLRCDIEQMIVAGDRVVVHLHFRGHFTGAFNGTAGRGQAIDFIATDIYRI DHGRIAENWHIEDNLTLMRQLGLVG
Sequences:
>Translated_185_residues MSIRLRSAARPVAHAFAAAACVVALWPAAARAADLVAPHSLTVAAGLPAAQARAQILAARRYGSFWNTGDPALARAALAD DFTDRTLPPGREQGAAGPLAASSTMRGAIPDLRCDIEQMIVAGDRVVVHLHFRGHFTGAFNGTAGRGQAIDFIATDIYRI DHGRIAENWHIEDNLTLMRQLGLVG >Mature_184_residues SIRLRSAARPVAHAFAAAACVVALWPAAARAADLVAPHSLTVAAGLPAAQARAQILAARRYGSFWNTGDPALARAALADD FTDRTLPPGREQGAAGPLAASSTMRGAIPDLRCDIEQMIVAGDRVVVHLHFRGHFTGAFNGTAGRGQAIDFIATDIYRID HGRIAENWHIEDNLTLMRQLGLVG
Specific function: Unknown
COG id: COG5485
COG function: function code R; Predicted ester cyclase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19597; Mature: 19465
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRLRSAARPVAHAFAAAACVVALWPAAARAADLVAPHSLTVAAGLPAAQARAQILAAR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH RYGSFWNTGDPALARAALADDFTDRTLPPGREQGAAGPLAASSTMRGAIPDLRCDIEQMI HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHH VAGDRVVVHLHFRGHFTGAFNGTAGRGQAIDFIATDIYRIDHGRIAENWHIEDNLTLMRQ HCCCEEEEEEEECCEEEEECCCCCCCCCEEHHHHHHEEECCCCCCCCCCCCCCCHHHHHH LGLVG CCCCC >Mature Secondary Structure SIRLRSAARPVAHAFAAAACVVALWPAAARAADLVAPHSLTVAAGLPAAQARAQILAAR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH RYGSFWNTGDPALARAALADDFTDRTLPPGREQGAAGPLAASSTMRGAIPDLRCDIEQMI HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHH VAGDRVVVHLHFRGHFTGAFNGTAGRGQAIDFIATDIYRIDHGRIAENWHIEDNLTLMRQ HCCCEEEEEEEECCEEEEECCCCCCCCCEEHHHHHHEEECCCCCCCCCCCCCCCHHHHHH LGLVG CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA