Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689490
Identifier: 116689490
GI number: 116689490
Start: 1622002
End: 1623012
Strand: Reverse
Name: 116689490
Synonym: Bcen2424_1468
Alternate gene names: NA
Gene position: 1623012-1622002 (Counterclockwise)
Preceding gene: 116689491
Following gene: 116689489
Centisome position: 46.59
GC content: 68.74
Gene sequence:
>1011_bases ATGACTCACGGTAACGACACGCCCGCGACGCCTCTGCCGCGTCGTACCTTCCTGGCCCAGGCCGGCGCCGGGCTCGCGGC CGGCGTCGCGCTGGCCGCAGGCACGCCCGTGCGTGCCGCCGCCGCGACGGTGCCGGCGCCCGCGACACCGGGCGCCACGC CGTTCTGGCCGGACGGCGCGCGGCTCGTGATCTCGATCTCGATGCAGTTCGAGGCGGGCGGACAACCGCCCACGGGCGCG GACAGTCCGTTTCCGGCCGTCGCGTTTCCGCCGTCGGTGCCGGTCGATCTCGCCTCGGCCACCTGGTTCGCATATGGCTA TCGGGAAGGGATTCCGCGCCTGCTCGACCTGTGGGACCGGCACGGCGTGAAAGTGACGTCGCACATGATCGGGGAAGCCG CGCGCCGGCATCCCGAACTGGCGCGCGAAATCGTATCGCGCGGCCACGAAGCCGCCGCGCACGGCCCGACGTGGCGCGCC CAATTCGCGATGAGCCGCGACGACGAGCGCCGCTTCCTGACCGACGCGCGCGACATGGTCGAAGCGGCGACCGGCCAGCG TCCGACCGGCTACAACTGCAACTGGCTGCGGCGCGGCCCGCATACGCTGTCGCTGCTGCAGGAACTCGGCTACACGTATC ACATCGACGACGTCAGTCGCGACGAACCGTTCATCGAGACCGTCGGCGGTCGCGATTTCGTGGTGGTCCCGTACACGCTG CGCAACAACGACATCCTGCTGATCGAAGGCCGTCACTACTCGCCGACGATGTTCGTCGAGCAGATCAAGCTCGATTTCGA CCAGCTGTACGCGGAAGCCGGGCAGCGGCGCAGATTGATGTCGATCAGTGCGCATGACCGGATCAGCGGCACGCCGCAGA TGGTCCGCGCGTGGGACGACTTCCTGCACTACGCTCGATCACACCCCGGGGTCGCTTTCATGCGCAAGGACGACATTGCG CGCTTCGCGCTGCACAGCCCGTCGACGCTGCGCGAGACCGAAACGATCTGA
Upstream 100 bases:
>100_bases TCTACCGGATCGACCACGGCCGGATCGCGGAAAACTGGCATATCGAGGACAACCTGACGCTGATGCGTCAGCTCGGGCTC GTCGGCTGACGGAGGGGACG
Downstream 100 bases:
>100_bases CCGGATTCCGTTCAACTCATCACCCAGGAGAGACTTTCATGGACGATCCGCTCCACGGAAAGACAGTACTCGTCGTCGGC GGCAGCTCCGGCATCGGCGC
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Polysaccharide Deacetylase Family Protein; Urate Catabolism Protein; Chitin Deacetylase; Xylanase/Chitin Deacetylase; Polysaccharide Deacetylase Family; Chitooligosaccharide Deacetylase; Chitooligosaccharide Deacetylase Protein; Deacetylase; Uricase; Saccharide Deacetylase Slightly; Polysaccharide Deacetylase Protein Pda4B; Hydrolase; Carbohydrate Esterase Family 4 Domain Protein; Chitinase; Deacetylase Protein; Cyclic Imide Hydrolase; Polysaccharide Deacetylase Domain-Containing Protein; Allantoinase
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MTHGNDTPATPLPRRTFLAQAGAGLAAGVALAAGTPVRAAAATVPAPATPGATPFWPDGARLVISISMQFEAGGQPPTGA DSPFPAVAFPPSVPVDLASATWFAYGYREGIPRLLDLWDRHGVKVTSHMIGEAARRHPELAREIVSRGHEAAAHGPTWRA QFAMSRDDERRFLTDARDMVEAATGQRPTGYNCNWLRRGPHTLSLLQELGYTYHIDDVSRDEPFIETVGGRDFVVVPYTL RNNDILLIEGRHYSPTMFVEQIKLDFDQLYAEAGQRRRLMSISAHDRISGTPQMVRAWDDFLHYARSHPGVAFMRKDDIA RFALHSPSTLRETETI
Sequences:
>Translated_336_residues MTHGNDTPATPLPRRTFLAQAGAGLAAGVALAAGTPVRAAAATVPAPATPGATPFWPDGARLVISISMQFEAGGQPPTGA DSPFPAVAFPPSVPVDLASATWFAYGYREGIPRLLDLWDRHGVKVTSHMIGEAARRHPELAREIVSRGHEAAAHGPTWRA QFAMSRDDERRFLTDARDMVEAATGQRPTGYNCNWLRRGPHTLSLLQELGYTYHIDDVSRDEPFIETVGGRDFVVVPYTL RNNDILLIEGRHYSPTMFVEQIKLDFDQLYAEAGQRRRLMSISAHDRISGTPQMVRAWDDFLHYARSHPGVAFMRKDDIA RFALHSPSTLRETETI >Mature_335_residues THGNDTPATPLPRRTFLAQAGAGLAAGVALAAGTPVRAAAATVPAPATPGATPFWPDGARLVISISMQFEAGGQPPTGAD SPFPAVAFPPSVPVDLASATWFAYGYREGIPRLLDLWDRHGVKVTSHMIGEAARRHPELAREIVSRGHEAAAHGPTWRAQ FAMSRDDERRFLTDARDMVEAATGQRPTGYNCNWLRRGPHTLSLLQELGYTYHIDDVSRDEPFIETVGGRDFVVVPYTLR NNDILLIEGRHYSPTMFVEQIKLDFDQLYAEAGQRRRLMSISAHDRISGTPQMVRAWDDFLHYARSHPGVAFMRKDDIAR FALHSPSTLRETETI
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37076; Mature: 36945
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHGNDTPATPLPRRTFLAQAGAGLAAGVALAAGTPVRAAAATVPAPATPGATPFWPDGA CCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC RLVISISMQFEAGGQPPTGADSPFPAVAFPPSVPVDLASATWFAYGYREGIPRLLDLWDR EEEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH HGVKVTSHMIGEAARRHPELAREIVSRGHEAAAHGPTWRAQFAMSRDDERRFLTDARDMV CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH EAATGQRPTGYNCNWLRRGPHTLSLLQELGYTYHIDDVSRDEPFIETVGGRDFVVVPYTL HHHCCCCCCCCCCCCEECCCHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCEEEEEEEEE RNNDILLIEGRHYSPTMFVEQIKLDFDQLYAEAGQRRRLMSISAHDRISGTPQMVRAWDD CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH FLHYARSHPGVAFMRKDDIARFALHSPSTLRETETI HHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHCCCC >Mature Secondary Structure THGNDTPATPLPRRTFLAQAGAGLAAGVALAAGTPVRAAAATVPAPATPGATPFWPDGA CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC RLVISISMQFEAGGQPPTGADSPFPAVAFPPSVPVDLASATWFAYGYREGIPRLLDLWDR EEEEEEEEEEECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH HGVKVTSHMIGEAARRHPELAREIVSRGHEAAAHGPTWRAQFAMSRDDERRFLTDARDMV CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH EAATGQRPTGYNCNWLRRGPHTLSLLQELGYTYHIDDVSRDEPFIETVGGRDFVVVPYTL HHHCCCCCCCCCCCCEECCCHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCEEEEEEEEE RNNDILLIEGRHYSPTMFVEQIKLDFDQLYAEAGQRRRLMSISAHDRISGTPQMVRAWDD CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHH FLHYARSHPGVAFMRKDDIARFALHSPSTLRETETI HHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA