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The map label for this gene is ygeR [H]

Identifier: 116689339

GI number: 116689339

Start: 1448907

End: 1449608

Strand: Reverse

Name: ygeR [H]

Synonym: Bcen2424_1317

Alternate gene names: 116689339

Gene position: 1449608-1448907 (Counterclockwise)

Preceding gene: 116689340

Following gene: 116689338

Centisome position: 41.61

GC content: 68.23

Gene sequence:

>702_bases
ATGTTCGGAACAACAACGAAGCGACTCTTCGCAGCCGCCTGCGCCGCGCTGCTCGTCGCGTGCGGCTCCGCGCCCGTCGG
CCCCGGGTTCTATCGCGTCGAGCGTGGCGACACGCTCTACAAGATCGCGCGCGACAACCGCACGTCGGTACAGAGCATCG
TGCGCTGGAACCAGATGACGAACCCCGATGCGATCGAAGTCGGCCAGGTGCTGCGCGTCGCGCCGCCGCCCGGCACGACC
ACCGCATCGACGCCGTCGACCACCGGCACCGGCAGCGCGGGCCGTGCACGCCCGGCGCCTTCCGCCCCGGTCGAATCGGC
CGTGAAGCCGGCCACGAGCATTGCGCTGATCTGGCCGGCGGCCGGCAACGTGGTGCGCACGTTCGACGGCTCGAAATCGA
AGGGCATCGACATCGCGAATTCGCCGGGCACGCCGGTGGTCGCGGCCGCACCGGGTGTCGTGGTCTATGCCGGTAACGGG
CTGCGCGGCTACGGCAACCTGATCATCCTGAAGCACAACGCCGATTACCTGACGGCCTACGCGCACAACCGAGCGCTCCT
GGTGAAGGAAGGCCAGTCGGTTACGCAAGGGCAATCGATCGCCGAGATGGGCAACAGCGACAGCGATCGTGTCGCGCTGC
ATTTCGAGCTGCGCTATGGCGGCCGCTCGATCGATCCGTCACGCTACCTGCCGGCGCGCTGA

Upstream 100 bases:

>100_bases
CGCGCCAGCGCCGAAACTGCGGTGCGCGGGTCGAACCCGTTAAAATCGGACGTTTTGTGTTGCCTGCCGCGTCACGCGCG
GCAGGGTCTTGCGAGGTTCA

Downstream 100 bases:

>100_bases
GCGCACGACAGACGACACGCGATGCCGTCACGCATCGCGTGCCGTCGCGGCGAAAACGGAACACATCAAGTCAGCGCTTG
CGCAGACGTCCGGTGAAACG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MFGTTTKRLFAAACAALLVACGSAPVGPGFYRVERGDTLYKIARDNRTSVQSIVRWNQMTNPDAIEVGQVLRVAPPPGTT
TASTPSTTGTGSAGRARPAPSAPVESAVKPATSIALIWPAAGNVVRTFDGSKSKGIDIANSPGTPVVAAAPGVVVYAGNG
LRGYGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMGNSDSDRVALHFELRYGGRSIDPSRYLPAR

Sequences:

>Translated_233_residues
MFGTTTKRLFAAACAALLVACGSAPVGPGFYRVERGDTLYKIARDNRTSVQSIVRWNQMTNPDAIEVGQVLRVAPPPGTT
TASTPSTTGTGSAGRARPAPSAPVESAVKPATSIALIWPAAGNVVRTFDGSKSKGIDIANSPGTPVVAAAPGVVVYAGNG
LRGYGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMGNSDSDRVALHFELRYGGRSIDPSRYLPAR
>Mature_233_residues
MFGTTTKRLFAAACAALLVACGSAPVGPGFYRVERGDTLYKIARDNRTSVQSIVRWNQMTNPDAIEVGQVLRVAPPPGTT
TASTPSTTGTGSAGRARPAPSAPVESAVKPATSIALIWPAAGNVVRTFDGSKSKGIDIANSPGTPVVAAAPGVVVYAGNG
LRGYGNLIILKHNADYLTAYAHNRALLVKEGQSVTQGQSIAEMGNSDSDRVALHFELRYGGRSIDPSRYLPAR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=205, Percent_Identity=45.8536585365854, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=36.5758754863813, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 24323; Mature: 24323

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGTTTKRLFAAACAALLVACGSAPVGPGFYRVERGDTLYKIARDNRTSVQSIVRWNQMT
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHCCC
NPDAIEVGQVLRVAPPPGTTTASTPSTTGTGSAGRARPAPSAPVESAVKPATSIALIWPA
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEECC
AGNVVRTFDGSKSKGIDIANSPGTPVVAAAPGVVVYAGNGLRGYGNLIILKHNADYLTAY
CCCEEEECCCCCCCCCEECCCCCCCEEEECCCEEEECCCCCCCCCCEEEEEECCCEEEEE
AHNRALLVKEGQSVTQGQSIAEMGNSDSDRVALHFELRYGGRSIDPSRYLPAR
ECCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MFGTTTKRLFAAACAALLVACGSAPVGPGFYRVERGDTLYKIARDNRTSVQSIVRWNQMT
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHCCC
NPDAIEVGQVLRVAPPPGTTTASTPSTTGTGSAGRARPAPSAPVESAVKPATSIALIWPA
CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEECC
AGNVVRTFDGSKSKGIDIANSPGTPVVAAAPGVVVYAGNGLRGYGNLIILKHNADYLTAY
CCCEEEECCCCCCCCCEECCCCCCCEEEECCCEEEECCCCCCCCCCEEEEEECCCEEEEE
AHNRALLVKEGQSVTQGQSIAEMGNSDSDRVALHFELRYGGRSIDPSRYLPAR
ECCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]