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The map label for this gene is dnaQ [H]

Identifier: 116689306

GI number: 116689306

Start: 1412454

End: 1413188

Strand: Reverse

Name: dnaQ [H]

Synonym: Bcen2424_1284

Alternate gene names: 116689306

Gene position: 1413188-1412454 (Counterclockwise)

Preceding gene: 116689307

Following gene: 116689304

Centisome position: 40.56

GC content: 66.8

Gene sequence:

>735_bases
ATGCGCCAGATCATTCTCGATACCGAAACCACCGGCCTGAACGCCCGCACGGGCGACCGTCTCATCGAAATCGGCTGCGT
CGAGCTGCTGAACCGGCGGCTCACCGGCAACAACCTGCACTTCTACGTGAATCCCGAGCGCGACAGCGATCCGGGCGCAC
TGGCGGTGCACGGCCTCACGACCGAATTCTTGAGCGACAAGCCGAAATTCGCGGAAGTCGCCCACCAGATCCTCGACTTC
GTGAAGGACGCCGAGCTGATCATCCACAACGCGCCGTTCGACCTGGGCTTCCTCGACGCCGAATTCGCGCGGCTCGGCCT
GCCGCCGTTCACCGAGCATTGCGGCGGCGTGATCGACACGCTGGTGCAGGCCAAGCAGATGTTCCCCGGCAAGCGCAATT
CGCTCGACGCACTGTGCGACCGCTTCGGCATCAGCAACGCGCACCGCACGCTGCACGGCGCACTGCTCGACTCGGAGCTG
CTCGCCGAGGTCTATCTCGCGATGACGCGCGGCCAGGACAGCCTCGTGATCGACATGCTCGACGACGCGGGCGCCGACGG
CGGCGCGGCGAACGGCAAACGCGTGTCGCTCGCCGCGCTCGACCTGGCCGTGGTGACCGCGAGCGAAGACGAGCTTGCCG
CGCACCAGGCTCAGCTCGACGAGCTCGACAAGTCGGTCAAGGGCACCTGCGTGTGGCGCCAGCCCGCCGACACGGATACC
GCCGAAGCAGCCTGA

Upstream 100 bases:

>100_bases
CCCGAAAACGAGCGCGCGGACGCGCTCGCGAACCGCGGCGTCGAATCGCTGGCCGCCTGAACCCCGGCCGCCCTCTCTTG
TTTTCATTGCTTTTCCCGAT

Downstream 100 bases:

>100_bases
GGCACGCGGCACGCGCCGCTCAGGCGCGCGGCTGCAGCGCGATGACGGCCATTCCGCCGAGCGCGAGCACCGCGCCGGCC
ACGTCCCAGCGGGTCAGCGC

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTTEFLSDKPKFAEVAHQILDF
VKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSEL
LAEVYLAMTRGQDSLVIDMLDDAGADGGAANGKRVSLAALDLAVVTASEDELAAHQAQLDELDKSVKGTCVWRQPADTDT
AEAA

Sequences:

>Translated_244_residues
MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTTEFLSDKPKFAEVAHQILDF
VKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSEL
LAEVYLAMTRGQDSLVIDMLDDAGADGGAANGKRVSLAALDLAVVTASEDELAAHQAQLDELDKSVKGTCVWRQPADTDT
AEAA
>Mature_244_residues
MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTTEFLSDKPKFAEVAHQILDF
VKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDTLVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSEL
LAEVYLAMTRGQDSLVIDMLDDAGADGGAANGKRVSLAALDLAVVTASEDELAAHQAQLDELDKSVKGTCVWRQPADTDT
AEAA

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=238, Percent_Identity=53.3613445378151, Blast_Score=252, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 26391; Mature: 26391

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLT
CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCH
TEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDT
HHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
LVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDML
HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
DDAGADGGAANGKRVSLAALDLAVVTASEDELAAHQAQLDELDKSVKGTCVWRQPADTDT
CCCCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
AEAA
CCCC
>Mature Secondary Structure
MRQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLT
CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEECCH
TEFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDT
HHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
LVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDML
HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
DDAGADGGAANGKRVSLAALDLAVVTASEDELAAHQAQLDELDKSVKGTCVWRQPADTDT
CCCCCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
AEAA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3023634; 6316347; 3540531; 9278503; 1575709 [H]