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The map label for this gene is yrbE [H]

Identifier: 116624403

GI number: 116624403

Start: 6673537

End: 6674883

Strand: Reverse

Name: yrbE [H]

Synonym: Acid_5325

Alternate gene names: 116624403

Gene position: 6674883-6673537 (Counterclockwise)

Preceding gene: 116624404

Following gene: 116624402

Centisome position: 66.98

GC content: 64.44

Gene sequence:

>1347_bases
ATGAATCGCCGCCAATTTATCCGCGCCGGAACCGCCGGGCTGGGCGCTGCCGCGCTCGGCTTCGCGCAAGCCGGAAGCAC
CAAAACGCCGCGCGTCGGCCTCATCGGCACTGGCTGGTACGGGAAGGCCGACCTCTTCCGCCTCCTTCAAGTCGCGCCCG
TGGAGGTGGTGTCGCTCTGCGACGTCGATCGCCGCATGCTCTCCGAGGCCGCCGATATGACGGCCGAGCGCCAGAAATCG
AAGAAGCGCCCCCGCACCTTCGCCGACTTCCGCCAGATGCTGGCCGAAAAGGACCTGGATATAGTCCTGATCGCGACCCC
CGACCACTGGCACGCGCTGCCCATGATCGCCGCCGTCAAGGCCGGCGCGCACGTGTATTGTCAGAAGCCGATCAGCGTGG
ACGTGGTCGAAGGCCAGGCCATGCTCGCCGCCGCGCGCAAATACAACCGCGTGGTGCAGATCGGCACGCAGCGGCGCAGT
ACCCCGCACTTGATGGAAGCCCGCGAGCAGATTGTGCGCGCCGGCAAACTCGGCAAGGTCGGGCTCGTCGAAATCTACTG
CTACTACCACATGCGCGCCGAAAACAATCCGCCCGATACGGCCCCGCCCGCGGAACTCGACTACAACATGTGGACCGGCC
CCGCGCCCATGCGCCCCTACAATTCCCTGGTCCATCCGCGCGGCTGGCGCGCCTTCATGGAGTACGGTAACGGCATCGTC
GGCGACATGTGCGTCCACATGCTGGATATGGTGCGCTGGATGATGGACCTGGGCTGGCCGCGTTCCGTTGAATCCACCGG
TGGAATCCTGGTGCAGAAGGGCTCCAAAGCCAACATCAGCGATACCCAGCTCGCGACCTTCGACTATGGAGACGTCAAGA
TCGTCTGGCAGCATCGTTCGTGGGGCGACGCGCCCGACGAGAAATATCCCTGGGCCGCCACGTTGTACGGCGACAAAGGC
ACCCTCAAGGCCGGTGTTATGGGCTACGATTTCACGCCCTCGGTGCGCGGCGAGAAGCCGGTCCACAAAGACGTCACCTA
CGAACTCGAGCAGTATCCCGAGGACAAGACCGAGAAAGATCTGGAGCGGCATGTGGCGCCCGCAATTCGCGGCCATATGA
AAGACTTGCTCAACGCGATCGCCACCAATGGACGTCCCGTGGCCGATATCGAACAGGGGCACATCTCCACCTCGAGCTGC
ATCCTGGCGAACATCGCCATGAACCTCGGCCGCACCCTGAAGTGGGATGCCGCGCAGCAGCGCGTCGTCGGCGACGAGGA
AGCGAACCGGTTGCTGCGCCGGCCCTATCGCGAGCCGTGGGTGCATCCCACGCCGGAATCGGTCTGA

Upstream 100 bases:

>100_bases
CGAGCCGCCGACGCCGAGGCCGGAAAGCGCCGCGAACGCGAAGATCTGGAAGCCAGCGCGGATCACACTCGAAAGCTGCT
GGGACTTTAAGGAGGGGAAT

Downstream 100 bases:

>100_bases
GGGATGGAAACGGCCGCGCACCGCATGCGCTGGAGCATCGCGATCCTCGTAAGTGCCGCGATCGCGGTCAGCTACTTCGA
TCGCCAGACCCTGCCCGTCG

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MNRRQFIRAGTAGLGAAALGFAQAGSTKTPRVGLIGTGWYGKADLFRLLQVAPVEVVSLCDVDRRMLSEAADMTAERQKS
KKRPRTFADFRQMLAEKDLDIVLIATPDHWHALPMIAAVKAGAHVYCQKPISVDVVEGQAMLAAARKYNRVVQIGTQRRS
TPHLMEAREQIVRAGKLGKVGLVEIYCYYHMRAENNPPDTAPPAELDYNMWTGPAPMRPYNSLVHPRGWRAFMEYGNGIV
GDMCVHMLDMVRWMMDLGWPRSVESTGGILVQKGSKANISDTQLATFDYGDVKIVWQHRSWGDAPDEKYPWAATLYGDKG
TLKAGVMGYDFTPSVRGEKPVHKDVTYELEQYPEDKTEKDLERHVAPAIRGHMKDLLNAIATNGRPVADIEQGHISTSSC
ILANIAMNLGRTLKWDAAQQRVVGDEEANRLLRRPYREPWVHPTPESV

Sequences:

>Translated_448_residues
MNRRQFIRAGTAGLGAAALGFAQAGSTKTPRVGLIGTGWYGKADLFRLLQVAPVEVVSLCDVDRRMLSEAADMTAERQKS
KKRPRTFADFRQMLAEKDLDIVLIATPDHWHALPMIAAVKAGAHVYCQKPISVDVVEGQAMLAAARKYNRVVQIGTQRRS
TPHLMEAREQIVRAGKLGKVGLVEIYCYYHMRAENNPPDTAPPAELDYNMWTGPAPMRPYNSLVHPRGWRAFMEYGNGIV
GDMCVHMLDMVRWMMDLGWPRSVESTGGILVQKGSKANISDTQLATFDYGDVKIVWQHRSWGDAPDEKYPWAATLYGDKG
TLKAGVMGYDFTPSVRGEKPVHKDVTYELEQYPEDKTEKDLERHVAPAIRGHMKDLLNAIATNGRPVADIEQGHISTSSC
ILANIAMNLGRTLKWDAAQQRVVGDEEANRLLRRPYREPWVHPTPESV
>Mature_448_residues
MNRRQFIRAGTAGLGAAALGFAQAGSTKTPRVGLIGTGWYGKADLFRLLQVAPVEVVSLCDVDRRMLSEAADMTAERQKS
KKRPRTFADFRQMLAEKDLDIVLIATPDHWHALPMIAAVKAGAHVYCQKPISVDVVEGQAMLAAARKYNRVVQIGTQRRS
TPHLMEAREQIVRAGKLGKVGLVEIYCYYHMRAENNPPDTAPPAELDYNMWTGPAPMRPYNSLVHPRGWRAFMEYGNGIV
GDMCVHMLDMVRWMMDLGWPRSVESTGGILVQKGSKANISDTQLATFDYGDVKIVWQHRSWGDAPDEKYPWAATLYGDKG
TLKAGVMGYDFTPSVRGEKPVHKDVTYELEQYPEDKTEKDLERHVAPAIRGHMKDLLNAIATNGRPVADIEQGHISTSSC
ILANIAMNLGRTLKWDAAQQRVVGDEEANRLLRRPYREPWVHPTPESV

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 50064; Mature: 50064

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRQFIRAGTAGLGAAALGFAQAGSTKTPRVGLIGTGWYGKADLFRLLQVAPVEVVSLC
CCCHHEECCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHH
DVDRRMLSEAADMTAERQKSKKRPRTFADFRQMLAEKDLDIVLIATPDHWHALPMIAAVK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
AGAHVYCQKPISVDVVEGQAMLAAARKYNRVVQIGTQRRSTPHLMEAREQIVRAGKLGKV
CCCEEEEECCCEEEEECCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCC
GLVEIYCYYHMRAENNPPDTAPPAELDYNMWTGPAPMRPYNSLVHPRGWRAFMEYGNGIV
EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCHH
GDMCVHMLDMVRWMMDLGWPRSVESTGGILVQKGSKANISDTQLATFDYGDVKIVWQHRS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEECC
WGDAPDEKYPWAATLYGDKGTLKAGVMGYDFTPSVRGEKPVHKDVTYELEQYPEDKTEKD
CCCCCCCCCCEEEEEECCCCCEEECEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHH
LERHVAPAIRGHMKDLLNAIATNGRPVADIEQGHISTSSCILANIAMNLGRTLKWDAAQQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECHHHHH
RVVGDEEANRLLRRPYREPWVHPTPESV
HHCCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRRQFIRAGTAGLGAAALGFAQAGSTKTPRVGLIGTGWYGKADLFRLLQVAPVEVVSLC
CCCHHEECCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCHHHHHHHH
DVDRRMLSEAADMTAERQKSKKRPRTFADFRQMLAEKDLDIVLIATPDHWHALPMIAAVK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
AGAHVYCQKPISVDVVEGQAMLAAARKYNRVVQIGTQRRSTPHLMEAREQIVRAGKLGKV
CCCEEEEECCCEEEEECCHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCCC
GLVEIYCYYHMRAENNPPDTAPPAELDYNMWTGPAPMRPYNSLVHPRGWRAFMEYGNGIV
EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCCHH
GDMCVHMLDMVRWMMDLGWPRSVESTGGILVQKGSKANISDTQLATFDYGDVKIVWQHRS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEECC
WGDAPDEKYPWAATLYGDKGTLKAGVMGYDFTPSVRGEKPVHKDVTYELEQYPEDKTEKD
CCCCCCCCCCEEEEEECCCCCEEECEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHH
LERHVAPAIRGHMKDLLNAIATNGRPVADIEQGHISTSSCILANIAMNLGRTLKWDAAQQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECHHHHH
RVVGDEEANRLLRRPYREPWVHPTPESV
HHCCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]