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The map label for this gene is xerD [C]

Identifier: 116622057

GI number: 116622057

Start: 3723873

End: 3724883

Strand: Reverse

Name: xerD [C]

Synonym: Acid_2943

Alternate gene names: 116622057

Gene position: 3724883-3723873 (Counterclockwise)

Preceding gene: 116622058

Following gene: 116622051

Centisome position: 37.38

GC content: 59.15

Gene sequence:

>1011_bases
ATGAGCCGCTCCAAGTCTGAGTCGCTGCTGGCCCTGACGGAAAGTTTCTTCCATAACTACTTACGGCAGACGCGCGGAGC
AAGCGTGCATACCGTGCGAGCCTACCGCGACGCGCTGAAGCTCTTCTACTTGTTCCTGGCAGGTCAGAAGCGGAAGCCCG
TGGCTAACCTCGCCCTGGACGATATCCAATCCGACGCCCTGCTCGCATTCTTAGATTATGTCGAATCGCGTCGAGGGAAC
TCCGCGGTTACCCGAAATTGTCGTCTAGCCGCGGTTCGCAGTTTTGTGCAGCACCTCCTGCGGCACGATGTAACGCGGGC
TGGTCAGTACGGTCGCATTCTCGCGATTCGCAACAAGAAAGCACTACGACGCGTCGCCACTTATCTGGAACCTGAAGAAG
CCCGCGCGGTGATCGCCGCCATTGATCGTCGGAGTCGTAATGGGGAACGCGATCACGCCCTGCTGCTGTTTCTCTATAAC
ACGGGAGCGCGCGTCAGCGAAGCGCTGGCGATACGCGCCAGTGATCTTCAATTGGAAAGGCCACGGCAAGTGCGGCTGCT
GGGCAAAGGCCGAAAGGAACGGATCTGTCCCCTTTGGCCCGAAACCGCATCAGCCCTACATCGGATCATTCCCGTAAGGA
GCGGGGAGGATTCCCTCTTCAGGAACACCCTCGGCGCGCTGCTAACGCGGGATGGTGTCGCCTATCTACTGCGCAAGTAC
GTCCGATCCGCGGCACAACACGCTCCTTCGCTACGAAAGCGCCGAGTCACCCCACACGTCATGCGGCACAGTTGTGCCGT
TGCCCTTCTGCAGGCGGGAATCGATGTTTCAGTGATTCGAGATTATCTCGGTCATGCGTCGGTGGCCACCACAAGCCGAT
ACATTACGACCAATCTTCAGATGAAGCGCGACGTACTGGAGGCCTTCTGGAAGCGAGCCGGACTTGGCCCCGCAGCACCG
CGACGATGGCGGCCATCACCGAAGCTGCTCGCGTTCCTCGAAAGTTTGTGA

Upstream 100 bases:

>100_bases
GCACTGAGAGTTACCTGCACACCACGCCGGAACTCCTGGACCTGGTCGGCAACCGGCTGCGGCGCCGATACAAAACTACA
ACATCTGAGGACGACCGTGT

Downstream 100 bases:

>100_bases
CGCCTTATGTGGAGTGAGCATTCCGCTCACCCCACTCCCGCCTCGGCCGGCGCGTCGATTCTTCATTCGCTCTGGATAAT
TCCGGAGTCCAGATAATGCG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSRSKSESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALDDIQSDALLAFLDYVESRRGN
SAVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKKALRRVATYLEPEEARAVIAAIDRRSRNGERDHALLLFLYN
TGARVSEALAIRASDLQLERPRQVRLLGKGRKERICPLWPETASALHRIIPVRSGEDSLFRNTLGALLTRDGVAYLLRKY
VRSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQMKRDVLEAFWKRAGLGPAAP
RRWRPSPKLLAFLESL

Sequences:

>Translated_336_residues
MSRSKSESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALDDIQSDALLAFLDYVESRRGN
SAVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKKALRRVATYLEPEEARAVIAAIDRRSRNGERDHALLLFLYN
TGARVSEALAIRASDLQLERPRQVRLLGKGRKERICPLWPETASALHRIIPVRSGEDSLFRNTLGALLTRDGVAYLLRKY
VRSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQMKRDVLEAFWKRAGLGPAAP
RRWRPSPKLLAFLESL
>Mature_335_residues
SRSKSESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALDDIQSDALLAFLDYVESRRGNS
AVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKKALRRVATYLEPEEARAVIAAIDRRSRNGERDHALLLFLYNT
GARVSEALAIRASDLQLERPRQVRLLGKGRKERICPLWPETASALHRIIPVRSGEDSLFRNTLGALLTRDGVAYLLRKYV
RSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQMKRDVLEAFWKRAGLGPAAPR
RWRPSPKLLAFLESL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=295, Percent_Identity=30.1694915254237, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790244, Length=244, Percent_Identity=27.4590163934426, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790768, Length=178, Percent_Identity=31.4606741573034, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38024; Mature: 37892

Theoretical pI: Translated: 11.60; Mature: 11.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSKSESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALD
CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
DIQSDALLAFLDYVESRRGNSAVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKK
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHH
ALRRVATYLEPEEARAVIAAIDRRSRNGERDHALLLFLYNTGARVSEALAIRASDLQLER
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCC
PRQVRLLGKGRKERICPLWPETASALHRIIPVRSGEDSLFRNTLGALLTRDGVAYLLRKY
CCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
VRSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQ
HHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHH
MKRDVLEAFWKRAGLGPAAPRRWRPSPKLLAFLESL
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC
>Mature Secondary Structure 
SRSKSESLLALTESFFHNYLRQTRGASVHTVRAYRDALKLFYLFLAGQKRKPVANLALD
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
DIQSDALLAFLDYVESRRGNSAVTRNCRLAAVRSFVQHLLRHDVTRAGQYGRILAIRNKK
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHH
ALRRVATYLEPEEARAVIAAIDRRSRNGERDHALLLFLYNTGARVSEALAIRASDLQLER
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCC
PRQVRLLGKGRKERICPLWPETASALHRIIPVRSGEDSLFRNTLGALLTRDGVAYLLRKY
CCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHH
VRSAAQHAPSLRKRRVTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQ
HHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHH
MKRDVLEAFWKRAGLGPAAPRRWRPSPKLLAFLESL
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]