Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 116622058

GI number: 116622058

Start: 3725849

End: 3727069

Strand: Reverse

Name: xerD [C]

Synonym: Acid_2945

Alternate gene names: 116622058

Gene position: 3727069-3725849 (Counterclockwise)

Preceding gene: 116622061

Following gene: 116622057

Centisome position: 37.4

GC content: 59.62

Gene sequence:

>1221_bases
ATGAAGGATTTGGTGAGGGCTGTTGATGGCCGCGAACGCGCAGTTGTTGAGTTGTGGCGAAAGGGCCATCTCTCACTCGG
AACGATCGTCATTTATCTTCAGTGGGTCCGGCGGTTCCGAACATACTGCGACAAGCGGAAACTACTCGCGACCGAACACC
TGACCGCAGCCGGGGTGCGGCGATTCACTCGCGCTTACGCCGGGCCCAGACTCAGAGGGCGCCCAAGCTCTCAGAATAGC
CGCAACCTCGCTGGCAATGCACTTCACGCGTGGGCTTGCGCGTTAGGAGCGCTGGGGGTGTCATTGCCGCAATGGCGCGA
GAAATGTGCGCCACCGCTGTCACCCTTGATGAAGGAATATTGCCATTACCGGCATGCACACGGCGGGGTCTCGGAAAGCA
CTTTGGTGCGCGATGTGGAAACCGCGCGTGGATTCCTCGGGCAGCTGCAGCGTAGAACGAAGTCTATTGCACGGGCAAAC
TTGGCAGATGTGGACGGGTTTGTGCAGGCGCTTGCCGCCCGGCTTTCCAAACGAACGGTTGCCGATACCTGCAGTTCGCT
CCGAGCGTTTCTCCGATTTCTGCACATGACAGGAAGGCTGCCGACTGATCTCGCCGGTGGAGTGATCGCACTGCGATATC
GGATAGATGAGCGGCCCCCACGCTGTTTGCCGTGGAGCGACGTGCAGAAGATTCTGCGTGGGATCTCTCGGACGGCAGCG
CCGGGCAAACGTGATTACGCGATTGTGTTGCTGTTGGCAACGTATGGCCTCGGCGCAGCCGAAGTCCTTGGAATTCGGTT
GGAAGATGTGGACTGGCAAGGCGGAGTGTTGAGGGTCTGTCGGCCGAAGACCAAGGTGTCGATCGAGCTTCCTCTGTTGC
CGGCAGTTGCGCAGGCATTGAGCGCGTACCTGCGATGGGAACGGCCGCCTGCTCGATCAGTGCCGCATATCTTTCTTCGG
GAAAACATGCCCTACGAGCCGATAACCAGCGGCGCCATTCGCCACCGTATTCGGTACTATGCGGGTCTGGCCGGCATTTC
AACCAAAGTGATCGGAGCCCATGCTTTCCGGCGCAGTCACGCGAGCAGACAGATTGATTCCGGAGCCAATGTCAAGGTTG
TGAGCGACATTCTCGGCCACCGTAGTTCGTCGTCCACCTCTGTGTATGTGCGGGTAGCGTTGGAGCGTCTGCGTGCGGTG
GCTCTCCCGGTGCCGCGATGA

Upstream 100 bases:

>100_bases
CGGAATTATCCAGAGCGATTGCGTGGGAAGTGCGTAGAAGGGGGCGAATCGTTCGTGGGCGTCGTGATAATTCCCTCATG
CGAGAGGCGTCCAATATTGC

Downstream 100 bases:

>100_bases
CCAACATCTTCCAGGGTCCAACTGCCGGCGAGCTGCATGCGTTCCTACAATTTAAGCGGAGCCTCGGTTATGGCTACATG
CGCGCGGAGTTTACGTTGCG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MKDLVRAVDGRERAVVELWRKGHLSLGTIVIYLQWVRRFRTYCDKRKLLATEHLTAAGVRRFTRAYAGPRLRGRPSSQNS
RNLAGNALHAWACALGALGVSLPQWREKCAPPLSPLMKEYCHYRHAHGGVSESTLVRDVETARGFLGQLQRRTKSIARAN
LADVDGFVQALAARLSKRTVADTCSSLRAFLRFLHMTGRLPTDLAGGVIALRYRIDERPPRCLPWSDVQKILRGISRTAA
PGKRDYAIVLLLATYGLGAAEVLGIRLEDVDWQGGVLRVCRPKTKVSIELPLLPAVAQALSAYLRWERPPARSVPHIFLR
ENMPYEPITSGAIRHRIRYYAGLAGISTKVIGAHAFRRSHASRQIDSGANVKVVSDILGHRSSSSTSVYVRVALERLRAV
ALPVPR

Sequences:

>Translated_406_residues
MKDLVRAVDGRERAVVELWRKGHLSLGTIVIYLQWVRRFRTYCDKRKLLATEHLTAAGVRRFTRAYAGPRLRGRPSSQNS
RNLAGNALHAWACALGALGVSLPQWREKCAPPLSPLMKEYCHYRHAHGGVSESTLVRDVETARGFLGQLQRRTKSIARAN
LADVDGFVQALAARLSKRTVADTCSSLRAFLRFLHMTGRLPTDLAGGVIALRYRIDERPPRCLPWSDVQKILRGISRTAA
PGKRDYAIVLLLATYGLGAAEVLGIRLEDVDWQGGVLRVCRPKTKVSIELPLLPAVAQALSAYLRWERPPARSVPHIFLR
ENMPYEPITSGAIRHRIRYYAGLAGISTKVIGAHAFRRSHASRQIDSGANVKVVSDILGHRSSSSTSVYVRVALERLRAV
ALPVPR
>Mature_406_residues
MKDLVRAVDGRERAVVELWRKGHLSLGTIVIYLQWVRRFRTYCDKRKLLATEHLTAAGVRRFTRAYAGPRLRGRPSSQNS
RNLAGNALHAWACALGALGVSLPQWREKCAPPLSPLMKEYCHYRHAHGGVSESTLVRDVETARGFLGQLQRRTKSIARAN
LADVDGFVQALAARLSKRTVADTCSSLRAFLRFLHMTGRLPTDLAGGVIALRYRIDERPPRCLPWSDVQKILRGISRTAA
PGKRDYAIVLLLATYGLGAAEVLGIRLEDVDWQGGVLRVCRPKTKVSIELPLLPAVAQALSAYLRWERPPARSVPHIFLR
ENMPYEPITSGAIRHRIRYYAGLAGISTKVIGAHAFRRSHASRQIDSGANVKVVSDILGHRSSSSTSVYVRVALERLRAV
ALPVPR

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=190, Percent_Identity=30, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790767, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45148; Mature: 45148

Theoretical pI: Translated: 11.44; Mature: 11.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLVRAVDGRERAVVELWRKGHLSLGTIVIYLQWVRRFRTYCDKRKLLATEHLTAAGVR
CCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFTRAYAGPRLRGRPSSQNSRNLAGNALHAWACALGALGVSLPQWREKCAPPLSPLMKEY
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
CHYRHAHGGVSESTLVRDVETARGFLGQLQRRTKSIARANLADVDGFVQALAARLSKRTV
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ADTCSSLRAFLRFLHMTGRLPTDLAGGVIALRYRIDERPPRCLPWSDVQKILRGISRTAA
HHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
PGKRDYAIVLLLATYGLGAAEVLGIRLEDVDWQGGVLRVCRPKTKVSIELPLLPAVAQAL
CCCCCCEEEEEEHHCCCCHHHHHEEEEECCCCCCCEEEEECCCCEEEEECCCHHHHHHHH
SAYLRWERPPARSVPHIFLRENMPYEPITSGAIRHRIRYYAGLAGISTKVIGAHAFRRSH
HHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRQIDSGANVKVVSDILGHRSSSSTSVYVRVALERLRAVALPVPR
HHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKDLVRAVDGRERAVVELWRKGHLSLGTIVIYLQWVRRFRTYCDKRKLLATEHLTAAGVR
CCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFTRAYAGPRLRGRPSSQNSRNLAGNALHAWACALGALGVSLPQWREKCAPPLSPLMKEY
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
CHYRHAHGGVSESTLVRDVETARGFLGQLQRRTKSIARANLADVDGFVQALAARLSKRTV
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ADTCSSLRAFLRFLHMTGRLPTDLAGGVIALRYRIDERPPRCLPWSDVQKILRGISRTAA
HHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
PGKRDYAIVLLLATYGLGAAEVLGIRLEDVDWQGGVLRVCRPKTKVSIELPLLPAVAQAL
CCCCCCEEEEEEHHCCCCHHHHHEEEEECCCCCCCEEEEECCCCEEEEECCCHHHHHHHH
SAYLRWERPPARSVPHIFLRENMPYEPITSGAIRHRIRYYAGLAGISTKVIGAHAFRRSH
HHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASRQIDSGANVKVVSDILGHRSSSSTSVYVRVALERLRAVALPVPR
HHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]