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The map label for this gene is mrnC [H]

Identifier: 116515371

GI number: 116515371

Start: 528500

End: 528886

Strand: Direct

Name: mrnC [H]

Synonym: SPD_0516

Alternate gene names: 116515371

Gene position: 528500-528886 (Clockwise)

Preceding gene: 116517189

Following gene: 116516580

Centisome position: 25.83

GC content: 46.25

Gene sequence:

>387_bases
GTGATTGATGTCAATCTCATTAACGGGATTGCGCTAGCCTTTGAGGGGGATGCGGTGTATTCTATGTATATTCGCCGTCA
CCTCATCCTCAAAGGTATGACCAAACCCAATAAACTCCATCAAGAAGCAACCAAGTATGTGTCAGCCAAGGCTCAGGCTC
GCCTGATTGCTCTCATGTTGGAGGAGCAGGTCCTAACGGAAAAAGAAGAAGAAATCTACAAACGTGGCCGCAATACCAAT
AGCCACACAAAGGCTAAAAATGCAGATGTCGTGACTTATCGTATGTCCACGGGATTTGAAGCGGTTATGGGCTATCTCCA
TATGACTGAGAATCTGGAACGTCTTGAGAGTTTGGTTTCATGGTGCATCCAAAAAGTGGAGGGCTAG

Upstream 100 bases:

>100_bases
CGTGCCAATCGAGACTTTGAGACAGCAGACCAAATCCGTGACCAATTGGTTACTCAAGGAATTAAGCTCCTTGATACCAA
GGATGGAGTGAGGTGGACAC

Downstream 100 bases:

>100_bases
AACATGAGGGAAAAAGAACTACAAGACTGGTTTCCTGAGGCTCGGATTTCAGACCAACCAGTAGAGAAAGAGGGCTATCT
CACGCTCCCTTTAGCTTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MIDVNLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQVLTEKEEEIYKRGRNTN
SHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVSWCIQKVEG

Sequences:

>Translated_128_residues
MIDVNLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQVLTEKEEEIYKRGRNTN
SHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVSWCIQKVEG
>Mature_128_residues
MIDVNLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALMLEEQVLTEKEEEIYKRGRNTN
SHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVSWCIQKVEG

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 14636; Mature: 14636

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVNLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALML
CEEEEEECCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EEQVLTEKEEEIYKRGRNTNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVS
HHHHHCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
WCIQKVEG
HHHHHHCC
>Mature Secondary Structure
MIDVNLINGIALAFEGDAVYSMYIRRHLILKGMTKPNKLHQEATKYVSAKAQARLIALML
CEEEEEECCEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EEQVLTEKEEEIYKRGRNTNSHTKAKNADVVTYRMSTGFEAVMGYLHMTENLERLESLVS
HHHHHCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
WCIQKVEG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]