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The map label for this gene is yqgF [C]

Identifier: 116515277

GI number: 116515277

Start: 384482

End: 384874

Strand: Direct

Name: yqgF [C]

Synonym: BCc_360

Alternate gene names: 116515277

Gene position: 384482-384874 (Clockwise)

Preceding gene: 116515276

Following gene: 116515278

Centisome position: 92.34

GC content: 16.28

Gene sequence:

>393_bases
ATGATTATTTTATGTTTTGATTATGGAATTAAAATTATTGGTATTGCTATTGCTGAAACAAAATTAAATTATTCAACACC
TATAAAATCTATTTTTAATAATAAAAAAAAAAATTTTTGGAATCAAATTAACATAATAATTAATATGTGGAAGCCAAAAT
ATATTGTTATAGGATATCCTTATAAAATAAAAAAAAAAATCAATAAAAAAATAAAAAAATTTGCTAAAGAAATAAAAAAA
AAATTTAAAATAAATTTTTTTTTATGTGATGAAAATTATTCAACTACAGAAGCTTTATTATTCTTAAAAGAAAAAAAAAA
AAAAAAAAAATATTGCTTACATTCAATATCAGCTAAAATAATTCTTGACAGCTGGATAAGAAAAAACATATAA

Upstream 100 bases:

>100_bases
ATAATGATATAAATTTACTATATAAAAATTATATAATAATAAAATATATACTAAAAATATACATAAATTTTATAAAATAA
ATACTTTCTTACATTAAAAA

Downstream 100 bases:

>100_bases
AAAATTTATAAAAATTTATTATTTATTGTATATCAACTATTATTTATATTGAACTAATTAAAAATGAATAAAAAAAAAAT
ATATAAATTACCACCAATCA

Product: YggF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MIILCFDYGIKIIGIAIAETKLNYSTPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYPYKIKKKINKKIKKFAKEIKK
KFKINFFLCDENYSTTEALLFLKEKKKKKKYCLHSISAKIILDSWIRKNI

Sequences:

>Translated_130_residues
MIILCFDYGIKIIGIAIAETKLNYSTPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYPYKIKKKINKKIKKFAKEIKK
KFKINFFLCDENYSTTEALLFLKEKKKKKKYCLHSISAKIILDSWIRKNI
>Mature_130_residues
MIILCFDYGIKIIGIAIAETKLNYSTPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYPYKIKKKINKKIKKFAKEIKK
KFKINFFLCDENYSTTEALLFLKEKKKKKKYCLHSISAKIILDSWIRKNI

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=30.0751879699248, Blast_Score=73, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BUCCC (Q056Y6)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802906.1
- ProteinModelPortal:   Q056Y6
- SMR:   Q056Y6
- STRING:   Q056Y6
- EnsemblBacteria:   EBBUCT00000001313
- GeneID:   4440744
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_360
- eggNOG:   COG0816
- GeneTree:   EBGT00050000008054
- HOGENOM:   HBG607919
- BioCyc:   BAPH372461:BCC_360-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15559; Mature: 15559

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILCFDYGIKIIGIAIAETKLNYSTPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYP
CEEEEEECCEEEEEEEEEECCCCCCCCHHHHHCCHHHHHHHEEEEEEEECCCCEEEEECC
YKIKKKINKKIKKFAKEIKKKFKINFFLCDENYSTTEALLFLKEKKKKKKYCLHSISAKI
HHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDSWIRKNI
HHHHHHHHCC
>Mature Secondary Structure
MIILCFDYGIKIIGIAIAETKLNYSTPIKSIFNNKKKNFWNQINIIINMWKPKYIVIGYP
CEEEEEECCEEEEEEEEEECCCCCCCCHHHHHCCHHHHHHHEEEEEEEECCCCEEEEECC
YKIKKKINKKIKKFAKEIKKKFKINFFLCDENYSTTEALLFLKEKKKKKKYCLHSISAKI
HHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILDSWIRKNI
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA