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The map label for this gene is ybeD [C]

Identifier: 116515228

GI number: 116515228

Start: 348866

End: 349129

Strand: Direct

Name: ybeD [C]

Synonym: BCc_307

Alternate gene names: 116515228

Gene position: 348866-349129 (Clockwise)

Preceding gene: 116515226

Following gene: 116515231

Centisome position: 83.79

GC content: 21.21

Gene sequence:

>264_bases
ATGACAAATAAATTAAAAAAAATGTTAAAATTCCCTTGTACTTTTACTTATAAAGTAATCGGATTAGCGCAACCAGAATT
GACTAATAATATTATAAAAATTATACAAAATCATATACCTGGAGATTACGCACCTCAAATAAAATCTAGTAATAAAGGAA
CATATTTATCAATTTCTATAACTATTTGTGCTAAAAATTTTAAACAAATAAAAAATTTATATAATGAATTAAGCAAAATT
CACTTAGTTAGAATGGTTTTATAA

Upstream 100 bases:

>100_bases
TAATTTTTTTTAAATAAAATTATATAATTTTTTTATAAATCCAATTAAATATAATATATAATATATAAATAATATATATA
TATACTATTCGGATATAAAA

Downstream 100 bases:

>100_bases
ATTAAATTTGCGATGCGGTATCATAATATTCCGCACCGCAAAAGTACTACTAAATCAATTAGTATAATAAAACTTTTTTC
GGTTTAAATTAAACACTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MTNKLKKMLKFPCTFTYKVIGLAQPELTNNIIKIIQNHIPGDYAPQIKSSNKGTYLSISITICAKNFKQIKNLYNELSKI
HLVRMVL

Sequences:

>Translated_87_residues
MTNKLKKMLKFPCTFTYKVIGLAQPELTNNIIKIIQNHIPGDYAPQIKSSNKGTYLSISITICAKNFKQIKNLYNELSKI
HLVRMVL
>Mature_86_residues
TNKLKKMLKFPCTFTYKVIGLAQPELTNNIIKIIQNHIPGDYAPQIKSSNKGTYLSISITICAKNFKQIKNLYNELSKIH
LVRMVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family

Homologues:

Organism=Escherichia coli, GI1786850, Length=87, Percent_Identity=52.8735632183908, Blast_Score=106, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y707_BUCCC (Q057D5)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802857.1
- ProteinModelPortal:   Q057D5
- SMR:   Q057D5
- STRING:   Q057D5
- EnsemblBacteria:   EBBUCT00000001271
- GeneID:   4440914
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_307
- eggNOG:   COG2921
- GeneTree:   EBGT00050000007878
- HOGENOM:   HBG297220
- OMA:   TSKEHIE
- ProtClustDB:   PRK04998
- BioCyc:   BAPH372461:BCC_307-MONOMER
- HAMAP:   MF_00659
- InterPro:   IPR007454

Pfam domain/function: PF04359 DUF493

EC number: NA

Molecular weight: Translated: 9968; Mature: 9837

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKLKKMLKFPCTFTYKVIGLAQPELTNNIIKIIQNHIPGDYAPQIKSSNKGTYLSISI
CCHHHHHHHHCCCCEEEHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
TICAKNFKQIKNLYNELSKIHLVRMVL
EEEHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNKLKKMLKFPCTFTYKVIGLAQPELTNNIIKIIQNHIPGDYAPQIKSSNKGTYLSISI
CHHHHHHHHCCCCEEEHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
TICAKNFKQIKNLYNELSKIHLVRMVL
EEEHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA