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The map label for this gene is recD [H]

Identifier: 116515209

GI number: 116515209

Start: 323110

End: 324891

Strand: Direct

Name: recD [H]

Synonym: BCc_283

Alternate gene names: 116515209

Gene position: 323110-324891 (Clockwise)

Preceding gene: 116515208

Following gene: 116515210

Centisome position: 77.6

GC content: 15.38

Gene sequence:

>1782_bases
ATGTTATCTAAAAATATAAAAAAATTTTTTAAAATAATAAAAATTGCAAAAAAGAAAAAAGAAATAAATTGTATAGATTA
TTACACATGTATTAATAAAAAAATTTCAAATTATTCACCTGAAGTTATATTAGTAATTCTTTACTTAATATATTCAGCTC
GACATGGACATAGTTGTATACCAAAAAAACATTTTGTTAAAAAAAAAATAAAAAGAAAAAATGTGTTTATAAAATTATTA
AATATTGTTAGTAAAAATAATATTAATTGGTTTAATACTGTAATAAGTAGCATGTTATGTAGTAACGGCACACAAAAAAC
ACCTCTTGTAATTGACAAAAAATATATTTATTTATATAAATATTGGTATTCAGAAAATAAAATAATTGAATTGCTTTATC
AAAAAAAAAGTAAAAAAAAAAAAAATAAAATAGAATATAAAAAATTAATAAAAAAATATTGTTCAAATTATATTGATAAA
AATCAAAAAAATGCAGTTAAAAAAGCTTTAATTCATAATTTGTTTTTTCTTCTTGGTGGTCCAGGCACAGGAAAAACAAA
TATAATAGCTTATTTAATTTTAATTTTAATTAAAATATCAAAAAAAAAAATAAAAATTCAATTGACAGCTCCTACAGGAA
AAGCGGTAAACAAACTAACTCAATCTATATATAAAATATTAAAAAAAAAAAACATTCAAAAAAATGAAAAAAAAATGATA
CCTAAAGAAGGAATTACATTACATAAATTATTTAAAATTCAAAAAGAAACTAATAAAAATAATGCGAAATATATAAAAAG
AAAAAAAAAAATTGATATTCTTATCATTGATGAATCATCTATGATTAGTTTAAATATAATGGAAATAATATTAACATGTA
TAAAAAAAAAAACAAAAATAATTTTTGTTGGAGATGTATATCAATTACCTTCTGTAGAAACTGGATCAATTTTAAAAAAA
ATATGTAATTTTAAAAAAAAAAAAAAAGAAAAAAAAAAAATTTTTTTTGTATTAAAAAAAAATTATAGATTTAATAAAAA
TTCAGGAATTAATTTCTTAATTAATCAATTAAAAAAAAAAAAAATCAAAGATATTAATAAGATTTATAAAAAAAAATATA
AAGATATAATATGGAAAAATTTAAATACATCAAATGATTATTTAAATATGCTTAAAAAAATAAAATTATATTATAAAAAA
TATTGGAATTATGTAAATAAAAAAAAAAATCCAAAAAAAATTATTCATAAATTTAATAAATATCGTATATTATGTATAAT
AAATAAAGGTATATTTGGAACTAAAAAAATAAATCAATATTTAGATAATTATTTTATAAAAATAAATAATAAAAAAAAAA
AAAAAGAATTTTGGTATCACGGAAAACCTATTATAATTAAAAAAAATAATATATTTTTAAAATTAATGAATGGAGATATA
GGAATTTGTTTATATAAAAAAAAAAAGAAAAAAATTTATTTTTTATTATCTACTGGAAAAATAAAAAAATTTAATCCAGA
AATTTTATTTCATTATAAAACTGCTTGGTCAACTACCATTCATAAATCTCAAGGATCAGAATTTTTATCTGTAAATATTA
TTATTCCAAATTATTTCTCTAATAAATTTTCTAAAGAATTATTTTATACTGCTATTAGTAGAGCTCAAAAAAAAGTTACA
ATTTATGCAAATAAAAAAATTTTAAATAAAATTATTAATAATAATAAAGAAAGGTATTCTGGTTTAAAAAAAAAAATAGA
AGAATTAAATATTTTTTCTTAA

Upstream 100 bases:

>100_bases
CTTAGAGCATTTGATAATAAAAATAACACTGGAACATATTTTATTAAACCTTCATATTTATTAATTAAAAATTTAGAAAA
TCTTATATATGGAAATTAAA

Downstream 100 bases:

>100_bases
TAAAATTATGGTTGCGGGGATTGGATTTGAACCAACGACCTTCGGGTTATGAGCCCGACGAGCTACCTGACTGCTCCACC
CCGCTATCAATTTAATTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLL
NIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDK
NQKNAVKKALIHNLFFLLGGPGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI
PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSILKK
ICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKK
YWNYVNKKKNPKKIIHKFNKYRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI
GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKELFYTAISRAQKKVT
IYANKKILNKIINNNKERYSGLKKKIEELNIFS

Sequences:

>Translated_593_residues
MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLL
NIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDK
NQKNAVKKALIHNLFFLLGGPGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI
PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSILKK
ICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKK
YWNYVNKKKNPKKIIHKFNKYRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI
GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKELFYTAISRAQKKVT
IYANKKILNKIINNNKERYSGLKKKIEELNIFS
>Mature_593_residues
MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLL
NIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDK
NQKNAVKKALIHNLFFLLGGPGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI
PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSILKK
ICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKK
YWNYVNKKKNPKKIIHKFNKYRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI
GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKELFYTAISRAQKKVT
IYANKKILNKIINNNKERYSGLKKKIEELNIFS

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=579, Percent_Identity=29.0155440414508, Blast_Score=313, Evalue=2e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 70498; Mature: 70498

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCI
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
PKKHFVKKKIKRKNVFIKLLNIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYK
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEE
YWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDKNQKNAVKKALIHNLFFLLGG
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI
CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHCC
PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKI
CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCEEEHHHHHHHHHHHCCCCEE
IFVGDVYQLPSVETGSILKKICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKK
EEEECCEECCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHH
KIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKKYWNYVNKKKNPKKIIHKFNK
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
YRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI
EEEEEEEECCCCCHHHHHHHHCCEEEEECCCCHHHHHEECCCEEEEECCCEEEEEECCCE
GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFS
EEEEEEECCCEEEEEEECCCCEECCCCEEEEEECHHHHEEECCCCCCEEEEEEEECCHHH
NKFSKELFYTAISRAQKKVTIYANKKILNKIINNNKERYSGLKKKIEELNIFS
HHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLSKNIKKFFKIIKIAKKKKEINCIDYYTCINKKISNYSPEVILVILYLIYSARHGHSCI
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
PKKHFVKKKIKRKNVFIKLLNIVSKNNINWFNTVISSMLCSNGTQKTPLVIDKKYIYLYK
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEE
YWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYIDKNQKNAVKKALIHNLFFLLGG
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PGTGKTNIIAYLILILIKISKKKIKIQLTAPTGKAVNKLTQSIYKILKKKNIQKNEKKMI
CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHCC
PKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILIIDESSMISLNIMEIILTCIKKKTKI
CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCEEEHHHHHHHHHHHCCCCEE
IFVGDVYQLPSVETGSILKKICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKK
EEEECCEECCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHH
KIKDINKIYKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKKYWNYVNKKKNPKKIIHKFNK
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
YRILCIINKGIFGTKKINQYLDNYFIKINNKKKKKEFWYHGKPIIIKKNNIFLKLMNGDI
EEEEEEEECCCCCHHHHHHHHCCEEEEECCCCHHHHHEECCCEEEEECCCEEEEEECCCE
GICLYKKKKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFS
EEEEEEECCCEEEEEEECCCCEECCCCEEEEEECHHHHEEECCCCCCEEEEEEEECCHHH
NKFSKELFYTAISRAQKKVTIYANKKILNKIINNNKERYSGLKKKIEELNIFS
HHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]