Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is tktB [H]
Identifier: 116515000
GI number: 116515000
Start: 63507
End: 65504
Strand: Direct
Name: tktB [H]
Synonym: BCc_058
Alternate gene names: 116515000
Gene position: 63507-65504 (Clockwise)
Preceding gene: 116514999
Following gene: 116515001
Centisome position: 15.25
GC content: 26.98
Gene sequence:
>1998_bases ATGTTATCTAGAAAAGATTTATCAAATGCATTAAGATTTTTAAGTATAGATGCTATTCAACAAGCTCAATCTGGTCATCC AGGTGCTCCTATGGGAATGGCGGACATTGCTGAAGTATTATGGAGAGATTTTTTAAAACATAATCCGAATAATCCTGCTT GGTTTAATAGAGATAGATTTATTTTATCTAATGGACATGCTTCTATGCTTTTATATAGTTTATTACATCTTTCCGGATAT AATATATCTATAGAAGATTTAAAAAATTTTAGAAATTGTTATTCTAAAACACCTGGTCACCCTGAAATTAATTGTACGCC TGGAGTAGAAATTACTACTGGACCATTAGGTCAAGGTTTAGCTTCAGGTATAGGAATGGCTATTTCAGAAAAATTATTAG CGCAATATTTTAATAGAGAAAATTTTAATATTATTGATCATTATACTTGGATTTTTGTAGGTGATGGATGTTTAATGGAA GGTATTTCTCATGAATCTTGTTCTTTAGCAGGTACTTTAAGTTTAGGTAAATTAATTGTTTTTTATGATAAAAATGGTAT TTCTATTGATGGTGAAATTTCCGATTGGTTTACTGATGATACAAAAAAACGTTTTTTATCATATAATTGGCATGTAATAG AAATTAATGGTCATGATTCAGAAGAAATTTCAAAAGCTATAATAATTGCTAAAAAAAATATTTTACAACCTTCTCTAATT ATTTGTAATACTATTATTGGATTTGGTTCACCAAATAAATCTGGAAAATCTTCTGTTCATGGAGCTCCTTTAGGGAGAAA CAAGAAAGTATTGTTAACACGTAAAAAATTAAAATGGTCTTATGCTCCTTTTTTTATTCCAAAAAATATTTATAAATTAT GGAATGCTTGTGATTCTGGAAATAAAGCAGAAGAAAAATGGAATAATCTGTTTAATAAATACAAAAAAAAATATTTAGAT TTATCAAATGAATATATTCGTCGTATTAATAATATATTACCTAATAACTTTAATGAGATAATAAGGAAATTATTATTTAA TTTTAATCATTCATTAACGAATTGTTCTACACGAGAAGCATCACAAAAAGTTTTAGAAAATATCGGAAAATTTTTACCTG AATTACTCGGAGGTTCAGCTGACTTAGCGCCTAGTAATTTAACTAAATGGTCTGGATCTAAGTCTATTAAAAAATATTTA AGAGGAAATTATATTCATTATGGAGTAAGAGAATTTGGAATGACGGCTATTGCTAATGGTATTTATCATCATGGTGGTTT TATTCCTTATACGGCTACATTTTTAGTATTTGTAGATTATGCACGTAATGCAATACGTATGTCTGCATTAATGAAAACAA AACAAATATTTATTTATACTCATGATTCTATTGGATTAGGAGAAGATGGTCCAACGCATCAACCTATAGAACATATTTCT TCTTTAAGAAATATACCGAATCTAAGTGTTTGGAGACCTTGTGATTCTGTAGAAACTGCTGTTTCTTGGTATTATGGAAT AAAAAGAAAAGATGGTCCTACAGCTATAATATTATCTAGACAGAATATAAAACAATATTTAAAAACAAATGATCAAATCA AACTTGTTTTTAAAGGTGCTTATATTTTAAGAGAATATGGGACAAATATTGATTTAATTATTATCGCAACTGGATCAGAA ATACCTTTAGCTATAAAAGTAGCAAAAAAATTATATGAGTTAAATTATAATATTCGAGTTGTATCCATGGTATCTACTGA CTGTTTTGATAATCAAAATTTAAAATATCGTGAATTAGTTTTACCAGATTCAATATATAATCGAGTATCTATTGAAGCTG GCATTAGTGATTATTGGTATAAATATATAGGTTTTAAAGGTATTAGAATAGGAATTGATTCTTTTGGAGAATCTGGACCA GGAAATAAATTATTTAAATTGTTTGGTTTTTCAGTAAAGAAAATTGTTTTACGTATTATTAAAAAATTTTTTAGTTAA
Upstream 100 bases:
>100_bases CAGTTTAGTAGTGATCAACAAGAATTAGAAAATTTTTTATTTGATAAATTATAATTACTTTATTATTTTAAAAAATTATT TTTATATATAAGGAAGGTAT
Downstream 100 bases:
>100_bases AAATTTTTTATAAGTTCAATAAAATAAAAATAGAATTTCTTTATTTTAAATATTTAAATTATATATAAATAACATTAGGA TATATATTTATGCATACTAA
Product: TktB
Products: NA
Alternate protein names: TK [H]
Number of amino acids: Translated: 665; Mature: 665
Protein sequence:
>665_residues MLSRKDLSNALRFLSIDAIQQAQSGHPGAPMGMADIAEVLWRDFLKHNPNNPAWFNRDRFILSNGHASMLLYSLLHLSGY NISIEDLKNFRNCYSKTPGHPEINCTPGVEITTGPLGQGLASGIGMAISEKLLAQYFNRENFNIIDHYTWIFVGDGCLME GISHESCSLAGTLSLGKLIVFYDKNGISIDGEISDWFTDDTKKRFLSYNWHVIEINGHDSEEISKAIIIAKKNILQPSLI ICNTIIGFGSPNKSGKSSVHGAPLGRNKKVLLTRKKLKWSYAPFFIPKNIYKLWNACDSGNKAEEKWNNLFNKYKKKYLD LSNEYIRRINNILPNNFNEIIRKLLFNFNHSLTNCSTREASQKVLENIGKFLPELLGGSADLAPSNLTKWSGSKSIKKYL RGNYIHYGVREFGMTAIANGIYHHGGFIPYTATFLVFVDYARNAIRMSALMKTKQIFIYTHDSIGLGEDGPTHQPIEHIS SLRNIPNLSVWRPCDSVETAVSWYYGIKRKDGPTAIILSRQNIKQYLKTNDQIKLVFKGAYILREYGTNIDLIIIATGSE IPLAIKVAKKLYELNYNIRVVSMVSTDCFDNQNLKYRELVLPDSIYNRVSIEAGISDYWYKYIGFKGIRIGIDSFGESGP GNKLFKLFGFSVKKIVLRIIKKFFS
Sequences:
>Translated_665_residues MLSRKDLSNALRFLSIDAIQQAQSGHPGAPMGMADIAEVLWRDFLKHNPNNPAWFNRDRFILSNGHASMLLYSLLHLSGY NISIEDLKNFRNCYSKTPGHPEINCTPGVEITTGPLGQGLASGIGMAISEKLLAQYFNRENFNIIDHYTWIFVGDGCLME GISHESCSLAGTLSLGKLIVFYDKNGISIDGEISDWFTDDTKKRFLSYNWHVIEINGHDSEEISKAIIIAKKNILQPSLI ICNTIIGFGSPNKSGKSSVHGAPLGRNKKVLLTRKKLKWSYAPFFIPKNIYKLWNACDSGNKAEEKWNNLFNKYKKKYLD LSNEYIRRINNILPNNFNEIIRKLLFNFNHSLTNCSTREASQKVLENIGKFLPELLGGSADLAPSNLTKWSGSKSIKKYL RGNYIHYGVREFGMTAIANGIYHHGGFIPYTATFLVFVDYARNAIRMSALMKTKQIFIYTHDSIGLGEDGPTHQPIEHIS SLRNIPNLSVWRPCDSVETAVSWYYGIKRKDGPTAIILSRQNIKQYLKTNDQIKLVFKGAYILREYGTNIDLIIIATGSE IPLAIKVAKKLYELNYNIRVVSMVSTDCFDNQNLKYRELVLPDSIYNRVSIEAGISDYWYKYIGFKGIRIGIDSFGESGP GNKLFKLFGFSVKKIVLRIIKKFFS >Mature_665_residues MLSRKDLSNALRFLSIDAIQQAQSGHPGAPMGMADIAEVLWRDFLKHNPNNPAWFNRDRFILSNGHASMLLYSLLHLSGY NISIEDLKNFRNCYSKTPGHPEINCTPGVEITTGPLGQGLASGIGMAISEKLLAQYFNRENFNIIDHYTWIFVGDGCLME GISHESCSLAGTLSLGKLIVFYDKNGISIDGEISDWFTDDTKKRFLSYNWHVIEINGHDSEEISKAIIIAKKNILQPSLI ICNTIIGFGSPNKSGKSSVHGAPLGRNKKVLLTRKKLKWSYAPFFIPKNIYKLWNACDSGNKAEEKWNNLFNKYKKKYLD LSNEYIRRINNILPNNFNEIIRKLLFNFNHSLTNCSTREASQKVLENIGKFLPELLGGSADLAPSNLTKWSGSKSIKKYL RGNYIHYGVREFGMTAIANGIYHHGGFIPYTATFLVFVDYARNAIRMSALMKTKQIFIYTHDSIGLGEDGPTHQPIEHIS SLRNIPNLSVWRPCDSVETAVSWYYGIKRKDGPTAIILSRQNIKQYLKTNDQIKLVFKGAYILREYGTNIDLIIIATGSE IPLAIKVAKKLYELNYNIRVVSMVSTDCFDNQNLKYRELVLPDSIYNRVSIEAGISDYWYKYIGFKGIRIGIDSFGESGP GNKLFKLFGFSVKKIVLRIIKKFFS
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=674, Percent_Identity=26.1127596439169, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI4507521, Length=674, Percent_Identity=26.1127596439169, Blast_Score=180, Evalue=3e-45, Organism=Homo sapiens, GI133778974, Length=265, Percent_Identity=29.811320754717, Blast_Score=111, Evalue=2e-24, Organism=Escherichia coli, GI1788808, Length=661, Percent_Identity=61.1195158850227, Blast_Score=885, Evalue=0.0, Organism=Escherichia coli, GI48994911, Length=659, Percent_Identity=59.3323216995448, Blast_Score=875, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=264, Percent_Identity=29.1666666666667, Blast_Score=111, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6319593, Length=668, Percent_Identity=45.059880239521, Blast_Score=556, Evalue=1e-159, Organism=Saccharomyces cerevisiae, GI6325331, Length=667, Percent_Identity=45.1274362818591, Blast_Score=555, Evalue=1e-159, Organism=Drosophila melanogaster, GI45551847, Length=670, Percent_Identity=26.5671641791045, Blast_Score=184, Evalue=1e-46, Organism=Drosophila melanogaster, GI45550715, Length=670, Percent_Identity=26.5671641791045, Blast_Score=184, Evalue=1e-46, Organism=Drosophila melanogaster, GI24666278, Length=674, Percent_Identity=24.6290801186944, Blast_Score=172, Evalue=5e-43, Organism=Drosophila melanogaster, GI24645119, Length=636, Percent_Identity=25.6289308176101, Blast_Score=157, Evalue=2e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 75287; Mature: 75287
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: PS00801 TRANSKETOLASE_1 ; PS00802 TRANSKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRKDLSNALRFLSIDAIQQAQSGHPGAPMGMADIAEVLWRDFLKHNPNNPAWFNRDRF CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEE ILSNGHASMLLYSLLHLSGYNISIEDLKNFRNCYSKTPGHPEINCTPGVEITTGPLGQGL EEECCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHH ASGIGMAISEKLLAQYFNRENFNIIDHYTWIFVGDGCLMEGISHESCSLAGTLSLGKLIV HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHCCCCCCCCCEEEEECCCCEEE FYDKNGISIDGEISDWFTDDTKKRFLSYNWHVIEINGHDSEEISKAIIIAKKNILQPSLI EECCCCCEECCCCHHHHCCHHHHHHEECCEEEEEECCCCHHHHHHHHEEEHHCCCCCHHH ICNTIIGFGSPNKSGKSSVHGAPLGRNKKVLLTRKKLKWSYAPFFIPKNIYKLWNACDSG HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHHHHHHHHCCCC NKAEEKWNNLFNKYKKKYLDLSNEYIRRINNILPNNFNEIIRKLLFNFNHSLTNCSTREA CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHH SQKVLENIGKFLPELLGGSADLAPSNLTKWSGSKSIKKYLRGNYIHYGVREFGMTAIANG HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEECHHHHHHHHHHHH IYHHGGFIPYTATFLVFVDYARNAIRMSALMKTKQIFIYTHDSIGLGEDGPTHQPIEHIS HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCCCCCCHHHHHH SLRNIPNLSVWRPCDSVETAVSWYYGIKRKDGPTAIILSRQNIKQYLKTNDQIKLVFKGA HHHCCCCCCEECCCHHHHHHHHHHHCCEECCCCCEEEEEHHHHHHHHCCCCCEEEEEECH YILREYGTNIDLIIIATGSEIPLAIKVAKKLYELNYNIRVVSMVSTDCFDNQNLKYRELV HHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEE LPDSIYNRVSIEAGISDYWYKYIGFKGIRIGIDSFGESGPGNKLFKLFGFSVKKIVLRII CCHHHHCCEEEECCCHHHHHHHHCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHH KKFFS HHHCC >Mature Secondary Structure MLSRKDLSNALRFLSIDAIQQAQSGHPGAPMGMADIAEVLWRDFLKHNPNNPAWFNRDRF CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEE ILSNGHASMLLYSLLHLSGYNISIEDLKNFRNCYSKTPGHPEINCTPGVEITTGPLGQGL EEECCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHH ASGIGMAISEKLLAQYFNRENFNIIDHYTWIFVGDGCLMEGISHESCSLAGTLSLGKLIV HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHHCCCCCCCCCEEEEECCCCEEE FYDKNGISIDGEISDWFTDDTKKRFLSYNWHVIEINGHDSEEISKAIIIAKKNILQPSLI EECCCCCEECCCCHHHHCCHHHHHHEECCEEEEEECCCCHHHHHHHHEEEHHCCCCCHHH ICNTIIGFGSPNKSGKSSVHGAPLGRNKKVLLTRKKLKWSYAPFFIPKNIYKLWNACDSG HHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHHHHHHHHCCCC NKAEEKWNNLFNKYKKKYLDLSNEYIRRINNILPNNFNEIIRKLLFNFNHSLTNCSTREA CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHH SQKVLENIGKFLPELLGGSADLAPSNLTKWSGSKSIKKYLRGNYIHYGVREFGMTAIANG HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEECHHHHHHHHHHHH IYHHGGFIPYTATFLVFVDYARNAIRMSALMKTKQIFIYTHDSIGLGEDGPTHQPIEHIS HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCCCCCCHHHHHH SLRNIPNLSVWRPCDSVETAVSWYYGIKRKDGPTAIILSRQNIKQYLKTNDQIKLVFKGA HHHCCCCCCEECCCHHHHHHHHHHHCCEECCCCCEEEEEHHHHHHHHCCCCCEEEEEECH YILREYGTNIDLIIIATGSEIPLAIKVAKKLYELNYNIRVVSMVSTDCFDNQNLKYRELV HHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEE LPDSIYNRVSIEAGISDYWYKYIGFKGIRIGIDSFGESGPGNKLFKLFGFSVKKIVLRII CCHHHHCCEEEECCCHHHHHHHHCCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHH KKFFS HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10993077 [H]