Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264

Click here to switch to the map view.

The map label for this gene is 116494166

Identifier: 116494166

GI number: 116494166

Start: 605728

End: 606429

Strand: Direct

Name: 116494166

Synonym: LSEI_0616

Alternate gene names: NA

Gene position: 605728-606429 (Clockwise)

Preceding gene: 116494165

Following gene: 116494167

Centisome position: 20.92

GC content: 50.43

Gene sequence:

>702_bases
ATGAAAATCGTGACTAATTTCGCCATCGCTTTTGTCACCCTGATGCTTGCAGGTTTCGTCGGGCCGCACCAGTCAGTTAT
GGCCGCAGATGATCTAGGCCCAAAAAAGTCCAGTGCTCAATTGACGGTTGATGCTGGCAATATCATGATTCAGCAGGTGC
CGGATTTGAATTTTGGTGGCATTTCTGTTCATGAAATCGTGAGTGGGTCCTTTCAGCGGCATCCGTTGAAAAGCAATCTG
GTGAATCCGGGACCGATTAAGACGGCAACAAATGCCAATGACGGCAATGCGACTGGACTATTACAAATTGCCGATTATCG
GGGCACCGGGGCTGGGTGGCGGCTTGAAGCAAAAATGGACGCGCTGACGGATGGCAAAGGGCATTTCTTGGCGGGGTATG
TTGATTTGGTTGGGTCACAGCTTACCGCGAGCAATCCCGATATCAACCCGATTAATCCTGCCGGCAGCAATGTGCCGCGG
CTGAATTTTGCCAAAGACAACACCTCTGTGAGTTCAACCGTTGTTTGGCAGGCCGATGCTGAGACGGGTACTAAGTCAGG
ACAAGGACAAGGCAATAACCAGACCACAATTGGTACCAGAACGGCATTGACGTTAGTTGCAACGAACACCAACGTCACTA
TTGCCAAAGGCAGGTATCAAGGCGCTATTACTTGGACCCTGAGCAATGCACCAAAAGGTTAG

Upstream 100 bases:

>100_bases
GGCGGACAAACCTGGTATCCGCTGATCGGTTTTGCACTCCTGATGATGAGCAGTTTGCGTCTTCAACTGTGGTTTAAACG
AAAAGACAGGGGGGACGATG

Downstream 100 bases:

>100_bases
GCCATGGTAAGGATTAACTTTTGGAGGAGCCAGAAGTGAGATGGGTGGACATGGTTGCTTGCTGAAGTCTGTAGCGAAAA
AATACGGTGCAATTGAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKIVTNFAIAFVTLMLAGFVGPHQSVMAADDLGPKKSSAQLTVDAGNIMIQQVPDLNFGGISVHEIVSGSFQRHPLKSNL
VNPGPIKTATNANDGNATGLLQIADYRGTGAGWRLEAKMDALTDGKGHFLAGYVDLVGSQLTASNPDINPINPAGSNVPR
LNFAKDNTSVSSTVVWQADAETGTKSGQGQGNNQTTIGTRTALTLVATNTNVTIAKGRYQGAITWTLSNAPKG

Sequences:

>Translated_233_residues
MKIVTNFAIAFVTLMLAGFVGPHQSVMAADDLGPKKSSAQLTVDAGNIMIQQVPDLNFGGISVHEIVSGSFQRHPLKSNL
VNPGPIKTATNANDGNATGLLQIADYRGTGAGWRLEAKMDALTDGKGHFLAGYVDLVGSQLTASNPDINPINPAGSNVPR
LNFAKDNTSVSSTVVWQADAETGTKSGQGQGNNQTTIGTRTALTLVATNTNVTIAKGRYQGAITWTLSNAPKG
>Mature_233_residues
MKIVTNFAIAFVTLMLAGFVGPHQSVMAADDLGPKKSSAQLTVDAGNIMIQQVPDLNFGGISVHEIVSGSFQRHPLKSNL
VNPGPIKTATNANDGNATGLLQIADYRGTGAGWRLEAKMDALTDGKGHFLAGYVDLVGSQLTASNPDINPINPAGSNVPR
LNFAKDNTSVSSTVVWQADAETGTKSGQGQGNNQTTIGTRTALTLVATNTNVTIAKGRYQGAITWTLSNAPKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24276; Mature: 24276

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVTNFAIAFVTLMLAGFVGPHQSVMAADDLGPKKSSAQLTVDAGNIMIQQVPDLNFGG
CEEEHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCCC
ISVHEIVSGSFQRHPLKSNLVNPGPIKTATNANDGNATGLLQIADYRGTGAGWRLEAKMD
EEHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEC
ALTDGKGHFLAGYVDLVGSQLTASNPDINPINPAGSNVPRLNFAKDNTSVSSTVVWQADA
CCCCCCCCEEEEEHHHHCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECC
ETGTKSGQGQGNNQTTIGTRTALTLVATNTNVTIAKGRYQGAITWTLSNAPKG
CCCCCCCCCCCCCCEEEECEEEEEEEEECCCEEEECCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKIVTNFAIAFVTLMLAGFVGPHQSVMAADDLGPKKSSAQLTVDAGNIMIQQVPDLNFGG
CEEEHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCCC
ISVHEIVSGSFQRHPLKSNLVNPGPIKTATNANDGNATGLLQIADYRGTGAGWRLEAKMD
EEHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEC
ALTDGKGHFLAGYVDLVGSQLTASNPDINPINPAGSNVPRLNFAKDNTSVSSTVVWQADA
CCCCCCCCEEEEEHHHHCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECC
ETGTKSGQGQGNNQTTIGTRTALTLVATNTNVTIAKGRYQGAITWTLSNAPKG
CCCCCCCCCCCCCCEEEECEEEEEEEEECCCEEEECCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA