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The map label for this gene is opuCC [H]

Identifier: 116493381

GI number: 116493381

Start: 1640258

End: 1641184

Strand: Reverse

Name: opuCC [H]

Synonym: PEPE_1653

Alternate gene names: 116493381

Gene position: 1641184-1640258 (Counterclockwise)

Preceding gene: 116493382

Following gene: 116493380

Centisome position: 89.57

GC content: 36.57

Gene sequence:

>927_bases
ATGTTAAAAAGATTTCTTAAATTAATTTTGCCGTTGGGCGCATTAGCTGTAGTTCTTTCCGGTTGTGGCTGGCCAGGACT
TGGTGGTACGACTGGAAATACAGTTAAAATTGCTGCCCAAAATACTACTGAACAACAGGTAATGTCTTCAGTTATTCAAC
AATTGATTGAACATGATACTAACTTGAATGCAGAGATTATCAATAACTTGGGGTCGGGAACGGTTAGTTTTCAAGCTCAA
AAACGTGGGGAAGCTGACCTAACGGCTGTTCGTTTTAGTGGAACGGATTACCAGACTATTTTGAATGGACCCCAAGGGCG
CACTCCAGAACAAGTGAATGCCTATGTTAAAAAAGAATTTAATCGGCGCTATGATATGACCTATTTCCCAACCTACGGAT
TTGCGGATACTTTCCAATTTATGGTGACGCAAGATTATGCCAAAAAACATCATCTAGAAAATGTTAGTGATCTTAAGAAA
ATTTCGTCAGATATGAAAGTCGGAATTGACCAAACTTGGCTAAGTCGTAAGGGTGATGGATACGCAGATTTTAAAAAACG
TTACGGTTATAGCTTTGGTAATATTTATCCCATGCAAATTGGGTTAGTTTATAATGCTCTTGCTAGTCATAAAATGGATA
CGGTTTTGGGTTACTCAACAGACGGAAGAATCCGTAGCTACAATTTAAAATTGTTGAAAGATGATAAAAATTACTTCCCA
CCATACAATGCAAGTGTGGTTGTGAATAATAAATCATTGAAGAAATATCCGGAATTGAAGCGGGTTCTTCATAAATTAGA
TGGAAAAATTTCATTGCAGACCATGCAAGAATTAAACTATCAAGTTGATAATAATTTGAAGGAACCATCAGTGGTTGCTA
AAGAATTTTTAGAAAAGAACCACTATTTTGAAGGAGGGAATAACTAA

Upstream 100 bases:

>100_bases
AGCGGGATCAATCCCTGTGATTATTTTAGCTTTAGTCGCCGATTTATTACTTGGAAAATTGGAAGACAAATTAACCCCTC
GAACACGGGAGGTGGGCTAA

Downstream 100 bases:

>100_bases
TGCAAAGTATGAATATTTGGCAACAATTAGCCTATTACTTCTCTCATAATGGCATGTACGTTCTTTCCGAATTTAGCCGT
CACTTTTTAATTTCAATTTA

Product: periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLKRFLKLILPLGALAVVLSGCGWPGLGGTTGNTVKIAAQNTTEQQVMSSVIQQLIEHDTNLNAEIINNLGSGTVSFQAQ
KRGEADLTAVRFSGTDYQTILNGPQGRTPEQVNAYVKKEFNRRYDMTYFPTYGFADTFQFMVTQDYAKKHHLENVSDLKK
ISSDMKVGIDQTWLSRKGDGYADFKKRYGYSFGNIYPMQIGLVYNALASHKMDTVLGYSTDGRIRSYNLKLLKDDKNYFP
PYNASVVVNNKSLKKYPELKRVLHKLDGKISLQTMQELNYQVDNNLKEPSVVAKEFLEKNHYFEGGNN

Sequences:

>Translated_308_residues
MLKRFLKLILPLGALAVVLSGCGWPGLGGTTGNTVKIAAQNTTEQQVMSSVIQQLIEHDTNLNAEIINNLGSGTVSFQAQ
KRGEADLTAVRFSGTDYQTILNGPQGRTPEQVNAYVKKEFNRRYDMTYFPTYGFADTFQFMVTQDYAKKHHLENVSDLKK
ISSDMKVGIDQTWLSRKGDGYADFKKRYGYSFGNIYPMQIGLVYNALASHKMDTVLGYSTDGRIRSYNLKLLKDDKNYFP
PYNASVVVNNKSLKKYPELKRVLHKLDGKISLQTMQELNYQVDNNLKEPSVVAKEFLEKNHYFEGGNN
>Mature_308_residues
MLKRFLKLILPLGALAVVLSGCGWPGLGGTTGNTVKIAAQNTTEQQVMSSVIQQLIEHDTNLNAEIINNLGSGTVSFQAQ
KRGEADLTAVRFSGTDYQTILNGPQGRTPEQVNAYVKKEFNRRYDMTYFPTYGFADTFQFMVTQDYAKKHHLENVSDLKK
ISSDMKVGIDQTWLSRKGDGYADFKKRYGYSFGNIYPMQIGLVYNALASHKMDTVLGYSTDGRIRSYNLKLLKDDKNYFP
PYNASVVVNNKSLKKYPELKRVLHKLDGKISLQTMQELNYQVDNNLKEPSVVAKEFLEKNHYFEGGNN

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=291, Percent_Identity=22.680412371134, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 34804; Mature: 34804

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRFLKLILPLGALAVVLSGCGWPGLGGTTGNTVKIAAQNTTEQQVMSSVIQQLIEHDT
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
NLNAEIINNLGSGTVSFQAQKRGEADLTAVRFSGTDYQTILNGPQGRTPEQVNAYVKKEF
CCCHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHH
NRRYDMTYFPTYGFADTFQFMVTQDYAKKHHLENVSDLKKISSDMKVGIDQTWLSRKGDG
CCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCCC
YADFKKRYGYSFGNIYPMQIGLVYNALASHKMDTVLGYSTDGRIRSYNLKLLKDDKNYFP
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCHHHHEEECCCCCEEEEEEEEEECCCCCCC
PYNASVVVNNKSLKKYPELKRVLHKLDGKISLQTMQELNYQVDNNLKEPSVVAKEFLEKN
CCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEHHHHHCCHHHCCCCCCHHHHHHHHHHHC
HYFEGGNN
CCCCCCCC
>Mature Secondary Structure
MLKRFLKLILPLGALAVVLSGCGWPGLGGTTGNTVKIAAQNTTEQQVMSSVIQQLIEHDT
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
NLNAEIINNLGSGTVSFQAQKRGEADLTAVRFSGTDYQTILNGPQGRTPEQVNAYVKKEF
CCCHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHH
NRRYDMTYFPTYGFADTFQFMVTQDYAKKHHLENVSDLKKISSDMKVGIDQTWLSRKGDG
CCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCCC
YADFKKRYGYSFGNIYPMQIGLVYNALASHKMDTVLGYSTDGRIRSYNLKLLKDDKNYFP
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCHHHHEEECCCCCEEEEEEEEEECCCCCCC
PYNASVVVNNKSLKKYPELKRVLHKLDGKISLQTMQELNYQVDNNLKEPSVVAKEFLEKN
CCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEHHHHHCCHHHCCCCCCHHHHHHHHHHHC
HYFEGGNN
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]