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The map label for this gene is opuCD [H]

Identifier: 116493380

GI number: 116493380

Start: 1639605

End: 1640258

Strand: Reverse

Name: opuCD [H]

Synonym: PEPE_1652

Alternate gene names: 116493380

Gene position: 1640258-1639605 (Counterclockwise)

Preceding gene: 116493381

Following gene: 116493379

Centisome position: 89.51

GC content: 39.6

Gene sequence:

>654_bases
ATGCAAAGTATGAATATTTGGCAACAATTAGCCTATTACTTCTCTCATAATGGCATGTACGTTCTTTCCGAATTTAGCCG
TCACTTTTTAATTTCAATTTATGGGGTGATTTTAGCTGCGATCGTAGGAATCCCAATTGGAATTCTTATTTCTAAACATC
GTAAATTGAGTGGCTGGATTGTTGGTCTGGCTAATGTTATTCAAACCATCCCATCTTTAGCAATGCTCTCGATTTTAATG
TTGGGTCTTGGTTTAGGAGTTACAACTGTAATTGTAACGGTATTCTTATACGCATTATTGCCCATTATTAAGAATACTTA
TACCGGAATGTTGAACGTAAACGAAGCATACTTAGATGCTGGTAAAGGAATGGGAATGACCAAGGTTCAAGTGCTTTGGA
TGATTGAACTGCCACTATCGCTATCGGTGATTCTGGCCGGAATTCGAAATGCACTTGTCTTGGCAATTGGAATTACCGCA
ATCGGAACGTTCGTTGGAGCTGGAGGTTTAGGAGATATCATTATTCGTGGAACTAATGCCACAAATGGTGGAGCAATTAT
CCTAGCCGGGGCATTACCAACCGCGTTGATGGCGATTATCTCAGATCTAGTCCTAGGGGCATTAGAGAAAAAAATGAGAA
AACGCACAATTTAA

Upstream 100 bases:

>100_bases
AAGAATTAAACTATCAAGTTGATAATAATTTGAAGGAACCATCAGTGGTTGCTAAAGAATTTTTAGAAAAGAACCACTAT
TTTGAAGGAGGGAATAACTA

Downstream 100 bases:

>100_bases
AACTAAAATTGAAAGTCATGGCCTGAAAGTCATGGCTTTTTTTGAAAAATAAATTTTGCAGCAAGCCACTGCAAAGTATT
AAATGGTTCTTTTTAAGACT

Product: glycine betaine/carnitine/choline ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MQSMNIWQQLAYYFSHNGMYVLSEFSRHFLISIYGVILAAIVGIPIGILISKHRKLSGWIVGLANVIQTIPSLAMLSILM
LGLGLGVTTVIVTVFLYALLPIIKNTYTGMLNVNEAYLDAGKGMGMTKVQVLWMIELPLSLSVILAGIRNALVLAIGITA
IGTFVGAGGLGDIIIRGTNATNGGAIILAGALPTALMAIISDLVLGALEKKMRKRTI

Sequences:

>Translated_217_residues
MQSMNIWQQLAYYFSHNGMYVLSEFSRHFLISIYGVILAAIVGIPIGILISKHRKLSGWIVGLANVIQTIPSLAMLSILM
LGLGLGVTTVIVTVFLYALLPIIKNTYTGMLNVNEAYLDAGKGMGMTKVQVLWMIELPLSLSVILAGIRNALVLAIGITA
IGTFVGAGGLGDIIIRGTNATNGGAIILAGALPTALMAIISDLVLGALEKKMRKRTI
>Mature_217_residues
MQSMNIWQQLAYYFSHNGMYVLSEFSRHFLISIYGVILAAIVGIPIGILISKHRKLSGWIVGLANVIQTIPSLAMLSILM
LGLGLGVTTVIVTVFLYALLPIIKNTYTGMLNVNEAYLDAGKGMGMTKVQVLWMIELPLSLSVILAGIRNALVLAIGITA
IGTFVGAGGLGDIIIRGTNATNGGAIILAGALPTALMAIISDLVLGALEKKMRKRTI

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=205, Percent_Identity=29.7560975609756, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788449, Length=190, Percent_Identity=33.1578947368421, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1789033, Length=175, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23096; Mature: 23096

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSMNIWQQLAYYFSHNGMYVLSEFSRHFLISIYGVILAAIVGIPIGILISKHRKLSGWI
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHH
VGLANVIQTIPSLAMLSILMLGLGLGVTTVIVTVFLYALLPIIKNTYTGMLNVNEAYLDA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHC
GKGMGMTKVQVLWMIELPLSLSVILAGIRNALVLAIGITAIGTFVGAGGLGDIIIRGTNA
CCCCCCHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
TNGGAIILAGALPTALMAIISDLVLGALEKKMRKRTI
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQSMNIWQQLAYYFSHNGMYVLSEFSRHFLISIYGVILAAIVGIPIGILISKHRKLSGWI
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHH
VGLANVIQTIPSLAMLSILMLGLGLGVTTVIVTVFLYALLPIIKNTYTGMLNVNEAYLDA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHC
GKGMGMTKVQVLWMIELPLSLSVILAGIRNALVLAIGITAIGTFVGAGGLGDIIIRGTNA
CCCCCCHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
TNGGAIILAGALPTALMAIISDLVLGALEKKMRKRTI
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]