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The map label for this gene is 116493371

Identifier: 116493371

GI number: 116493371

Start: 1627272

End: 1627694

Strand: Reverse

Name: 116493371

Synonym: PEPE_1643

Alternate gene names: NA

Gene position: 1627694-1627272 (Counterclockwise)

Preceding gene: 116493372

Following gene: 116493369

Centisome position: 88.83

GC content: 37.12

Gene sequence:

>423_bases
ATGGCTAATGAAATGATGAATCGTAGGAATGATATGTGGGATCCATTTTTTGACCGTTTATCGCGCGGATTTTTCAACAA
CGGCTGGGATGGAACCTCAAAAACATTGAAGACCGACGTGAGTGAATCAGATACTGATTACAAAGTTAAAATCGATGTGC
CAGGAATTGATAAAAAAGATATTAAATTGGATTATCAAGATGGCGTACTAAATGTGGAAGTGAAGAAAGATAGTTTTGCT
GATCATGAAGATGAAAAGCATAATGTTACGATGACCGAACGAAGCTATGGTATCATGCGGAGAAGTTACGAATTACCAAG
AGTTAAGGCTGAAGATATTAAGGCTAAAGTTGATAATGGAGTTTTATCAATTACCTTACCTAAGGCCAGTGGTGAAAAGA
CTTCCGGAATTGAAATCGAATAG

Upstream 100 bases:

>100_bases
GAGTAAAGTAATTGACATAATACTATAATGTGACTAACATTATAGGTGTAAGGATGAAGCGAAGAACTTCACCAATCATT
TAGAAAGGGGTTTTGTTTTT

Downstream 100 bases:

>100_bases
AAACTAAATAAAAAACCGTGTTACGATTGTGTCTCGCAACGCGGTTTTTCTTTACATAAGTTAATCGGGATCATCGGGAT
GTATTTTCATTAGTGTAGGG

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MANEMMNRRNDMWDPFFDRLSRGFFNNGWDGTSKTLKTDVSESDTDYKVKIDVPGIDKKDIKLDYQDGVLNVEVKKDSFA
DHEDEKHNVTMTERSYGIMRRSYELPRVKAEDIKAKVDNGVLSITLPKASGEKTSGIEIE

Sequences:

>Translated_140_residues
MANEMMNRRNDMWDPFFDRLSRGFFNNGWDGTSKTLKTDVSESDTDYKVKIDVPGIDKKDIKLDYQDGVLNVEVKKDSFA
DHEDEKHNVTMTERSYGIMRRSYELPRVKAEDIKAKVDNGVLSITLPKASGEKTSGIEIE
>Mature_139_residues
ANEMMNRRNDMWDPFFDRLSRGFFNNGWDGTSKTLKTDVSESDTDYKVKIDVPGIDKKDIKLDYQDGVLNVEVKKDSFAD
HEDEKHNVTMTERSYGIMRRSYELPRVKAEDIKAKVDNGVLSITLPKASGEKTSGIEIE

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 16056; Mature: 15925

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANEMMNRRNDMWDPFFDRLSRGFFNNGWDGTSKTLKTDVSESDTDYKVKIDVPGIDKKD
CCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCC
IKLDYQDGVLNVEVKKDSFADHEDEKHNVTMTERSYGIMRRSYELPRVKAEDIKAKVDNG
EEEECCCCEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHEECCCC
VLSITLPKASGEKTSGIEIE
EEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
ANEMMNRRNDMWDPFFDRLSRGFFNNGWDGTSKTLKTDVSESDTDYKVKIDVPGIDKKD
CCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCC
IKLDYQDGVLNVEVKKDSFADHEDEKHNVTMTERSYGIMRRSYELPRVKAEDIKAKVDNG
EEEECCCCEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHEECCCC
VLSITLPKASGEKTSGIEIE
EEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9657935 [H]