BacMap

Definition	Pediococcus pentosaceus ATCC 25745, complete genome.
Accession	NC_008525
Length	1,832,387

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The map label for this gene is yqjQ [H]

Identifier: 116492892

GI number: 116492892

Start: 1130778

End: 1131563

Strand: Reverse

Name: yqjQ [H]

Synonym: PEPE_1131

Alternate gene names: 116492892

Gene position: 1131563-1130778 (Counterclockwise)

Preceding gene: 116492893

Following gene: 116492891

Centisome position: 61.75

GC content: 37.91

Gene sequence:

>786_bases
ATGACAACGGCAGTAATTACTGGAGCAGGCAGCGGTTTAGGGCAAAAGATTGCAATTTTGAATAGCACTCGCTATGATAA
TTTAGTTTTAATTGGAAGAAACTCAAAAAAATTAAATGCAACGGCTGAAAAATGTATTGTTAAGGGTGAAAATAGAGTAT
TCTGTTTGGCATGTGATTTAACGAATGAGGAACAAATCCGTCAAACGGGAGCATGGATTGATTCACACCTTGGAACAGTC
GATTTATTAGTTAATAACGCTGGGCTGGGATATTTTGAAAACTTGTTAAGTCAAAGCTTTGAACAAATTGAACGAACATT
TGCGACAGACCTGACGGGGATGATTAAGTTTACACGCCTAATGTTGCCATTAATGGTGGATCACGTTGGAGAAGCTGCAG
ATATTGTTAATATTGCTTCTATTGCTGGTAAAATTGCGACGGCTAAAACAACTACGTACGCTAGTGCTAAATTCGGCGTG
ATCGGCTTTTCTAACGCACTTCGTCTAGAAATGTATGACCGCAACATCCGTGTCCACACAATTAACCCAGGACCAATGGA
TACTAATTTCTTTAGTATTGCTGATCCTAGTGGTAAATATTTAAAAGGTGTTCAACAATTCGTGATTAACGCGAATCAAG
TGGCTGAATTGGTGAATAAGGCCATTATTGAAAATCTTAGGGAAGTTAATGTACCTAAAATAATGGGAGTGGGAGCGATT
ATGTACACCTTATTTCCTAAAATGGGTGATTTAATCGTTAATAGTCCCTTGATTAATCGAAAGTAG

Upstream 100 bases:

>100_bases
AACTTGAAAGTGATGCAAAGGAAATTTTTAGTAATAGTAAAGTTGTTCGTGATTTTGACATAATTGATATTCCATTACCT
TAAAAGTAGGAGTGATTTTA

Downstream 100 bases:

>100_bases
TTGGAGTTAATTAATGAAAGATAACAGATTTAATTGGCAAGTTAGCAAGTTAGATGATGTTGATATCGATCAACTGGCAT
CGGAAACCAAACTTAGCCAG

Product: Short-chain dehydrogenase of various substrate specificities

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTTAVITGAGSGLGQKIAILNSTRYDNLVLIGRNSKKLNATAEKCIVKGENRVFCLACDLTNEEQIRQTGAWIDSHLGTV
DLLVNNAGLGYFENLLSQSFEQIERTFATDLTGMIKFTRLMLPLMVDHVGEAADIVNIASIAGKIATAKTTTYASAKFGV
IGFSNALRLEMYDRNIRVHTINPGPMDTNFFSIADPSGKYLKGVQQFVINANQVAELVNKAIIENLREVNVPKIMGVGAI
MYTLFPKMGDLIVNSPLINRK

Sequences:

>Translated_261_residues
MTTAVITGAGSGLGQKIAILNSTRYDNLVLIGRNSKKLNATAEKCIVKGENRVFCLACDLTNEEQIRQTGAWIDSHLGTV
DLLVNNAGLGYFENLLSQSFEQIERTFATDLTGMIKFTRLMLPLMVDHVGEAADIVNIASIAGKIATAKTTTYASAKFGV
IGFSNALRLEMYDRNIRVHTINPGPMDTNFFSIADPSGKYLKGVQQFVINANQVAELVNKAIIENLREVNVPKIMGVGAI
MYTLFPKMGDLIVNSPLINRK
>Mature_260_residues
TTAVITGAGSGLGQKIAILNSTRYDNLVLIGRNSKKLNATAEKCIVKGENRVFCLACDLTNEEQIRQTGAWIDSHLGTVD
LLVNNAGLGYFENLLSQSFEQIERTFATDLTGMIKFTRLMLPLMVDHVGEAADIVNIASIAGKIATAKTTTYASAKFGVI
GFSNALRLEMYDRNIRVHTINPGPMDTNFFSIADPSGKYLKGVQQFVINANQVAELVNKAIIENLREVNVPKIMGVGAIM
YTLFPKMGDLIVNSPLINRK

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=33.5078534031414, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI210032110, Length=253, Percent_Identity=26.8774703557312, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI142976729, Length=196, Percent_Identity=32.1428571428571, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI25282469, Length=274, Percent_Identity=27.007299270073, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI40254992, Length=185, Percent_Identity=29.1891891891892, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI7706318, Length=236, Percent_Identity=26.6949152542373, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI40807363, Length=256, Percent_Identity=24.609375, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=28.7179487179487, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI31542939, Length=192, Percent_Identity=29.1666666666667, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI310128830, Length=253, Percent_Identity=25.296442687747, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI310115468, Length=253, Percent_Identity=25.296442687747, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI157739938, Length=256, Percent_Identity=25.390625, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI109715829, Length=223, Percent_Identity=28.2511210762332, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI7657478, Length=193, Percent_Identity=28.4974093264249, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI44680136, Length=102, Percent_Identity=36.2745098039216, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI44680133, Length=102, Percent_Identity=36.2745098039216, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI17738292, Length=102, Percent_Identity=36.2745098039216, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40548397, Length=236, Percent_Identity=26.6949152542373, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI214010158, Length=236, Percent_Identity=26.6949152542373, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI214010156, Length=236, Percent_Identity=26.6949152542373, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI22758144, Length=236, Percent_Identity=26.6949152542373, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI210032112, Length=185, Percent_Identity=25.9459459459459, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI38348362, Length=174, Percent_Identity=25.8620689655172, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI224922801, Length=168, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI38424085, Length=174, Percent_Identity=25.8620689655172, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI4758504, Length=235, Percent_Identity=28.5106382978723, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI4557649, Length=235, Percent_Identity=26.3829787234043, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1786701, Length=164, Percent_Identity=29.8780487804878, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787335, Length=227, Percent_Identity=26.8722466960352, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367175, Length=231, Percent_Identity=26.4069264069264, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787820, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789057, Length=186, Percent_Identity=27.4193548387097, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787905, Length=186, Percent_Identity=29.5698924731183, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788459, Length=203, Percent_Identity=26.6009852216749, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082100, Length=201, Percent_Identity=28.3582089552239, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=26.7379679144385, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=193, Percent_Identity=30.5699481865285, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=194, Percent_Identity=30.4123711340206, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=192, Percent_Identity=30.7291666666667, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI193203115, Length=248, Percent_Identity=27.4193548387097, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI193203117, Length=248, Percent_Identity=27.4193548387097, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=199, Percent_Identity=29.6482412060301, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=195, Percent_Identity=29.7435897435897, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=197, Percent_Identity=27.9187817258883, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=212, Percent_Identity=26.4150943396226, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=199, Percent_Identity=29.1457286432161, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=196, Percent_Identity=29.0816326530612, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=215, Percent_Identity=28.3720930232558, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=27.5, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=193, Percent_Identity=29.0155440414508, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=233, Percent_Identity=25.3218884120172, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=184, Percent_Identity=27.7173913043478, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=196, Percent_Identity=25, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=205, Percent_Identity=25.8536585365854, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=195, Percent_Identity=25.6410256410256, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=194, Percent_Identity=25.2577319587629, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=200, Percent_Identity=29.5, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=213, Percent_Identity=24.8826291079812, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=194, Percent_Identity=24.7422680412371, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=24.7422680412371, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=249, Percent_Identity=26.1044176706827, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=211, Percent_Identity=25.5924170616114, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=220, Percent_Identity=26.8181818181818, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=195, Percent_Identity=25.1282051282051, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=32.6424870466321, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6320089, Length=203, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=195, Percent_Identity=32.3076923076923, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571526, Length=187, Percent_Identity=32.620320855615, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=29.5698924731183, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=30.3191489361702, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281364892, Length=234, Percent_Identity=26.0683760683761, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355631, Length=256, Percent_Identity=26.953125, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=32.9787234042553, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221510726, Length=193, Percent_Identity=30.5699481865285, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=26.8041237113402, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21358495, Length=189, Percent_Identity=24.8677248677249, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643142, Length=182, Percent_Identity=27.4725274725275, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571387, Length=222, Percent_Identity=27.027027027027, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24639444, Length=200, Percent_Identity=26, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281364494, Length=197, Percent_Identity=27.9187817258883, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641232, Length=206, Percent_Identity=27.6699029126214, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648944, Length=209, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24640492, Length=255, Percent_Identity=23.1372549019608, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24640442, Length=199, Percent_Identity=29.1457286432161, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24648693, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21355889, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24584744, Length=184, Percent_Identity=29.8913043478261, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI28574402, Length=184, Percent_Identity=29.8913043478261, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28488; Mature: 28357

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAVITGAGSGLGQKIAILNSTRYDNLVLIGRNSKKLNATAEKCIVKGENRVFCLACDL
CCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCHHHHHHHEEECCCEEEEEEECC
TNEEQIRQTGAWIDSHLGTVDLLVNNAGLGYFENLLSQSFEQIERTFATDLTGMIKFTRL
CCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLPLMVDHVGEAADIVNIASIAGKIATAKTTTYASAKFGVIGFSNALRLEMYDRNIRVHT
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCEECEEECCCEEEEEEECCCEEEEE
INPGPMDTNFFSIADPSGKYLKGVQQFVINANQVAELVNKAIIENLREVNVPKIMGVGAI
ECCCCCCCCCEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
MYTLFPKMGDLIVNSPLINRK
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TTAVITGAGSGLGQKIAILNSTRYDNLVLIGRNSKKLNATAEKCIVKGENRVFCLACDL
CEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCHHHHHHHEEECCCEEEEEEECC
TNEEQIRQTGAWIDSHLGTVDLLVNNAGLGYFENLLSQSFEQIERTFATDLTGMIKFTRL
CCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLPLMVDHVGEAADIVNIASIAGKIATAKTTTYASAKFGVIGFSNALRLEMYDRNIRVHT
HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCEECEEECCCEEEEEEECCCEEEEE
INPGPMDTNFFSIADPSGKYLKGVQQFVINANQVAELVNKAIIENLREVNVPKIMGVGAI
ECCCCCCCCCEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
MYTLFPKMGDLIVNSPLINRK
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]