| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is recJ [H]
Identifier: 116492891
GI number: 116492891
Start: 1128443
End: 1130764
Strand: Reverse
Name: recJ [H]
Synonym: PEPE_1130
Alternate gene names: 116492891
Gene position: 1130764-1128443 (Counterclockwise)
Preceding gene: 116492892
Following gene: 116492890
Centisome position: 61.71
GC content: 37.6
Gene sequence:
>2322_bases ATGAAAGATAACAGATTTAATTGGCAAGTTAGCAAGTTAGATGATGTTGATATCGATCAACTGGCATCGGAAACCAAACT TAGCCAGACGATGGTTAAAATCATGGTCGCTAGAGGTTTTAAAACAGGCGAGGATATTCTCAGTTTTATTGATGAGGATA TGTCGATTGTACATGATCCGATGCTACTGCACGATATGCAAAAAGCCCTTGACCGAATTTTTGTGGCGATTGAAAGCAAC GAAAAAATTCTTGTATACGGTGATTATGATGCAGATGGGGTTACAAGTACGACCATTATGTATGAAACGTTAGATCAGTT AGGGGCTAACGTGCAATACTTTGTTCCAGACCGTTTTAAGGATGGTTATGGTCCTAATTTGAAGAAGTACCAACACTTCA TTAATGATGAAGGGGTTCAGTTAATCATTACCGTGGATAATGGAGTTGCCGGAAATGAAGCAATCAAATTTGCTGAAGAT CAGGGTACGAATGTTATTGTCACGGATCATCATGAAATACCAGAAGTATTACCGGAGGCATATGCAATTATCCATCCACG TCACCCAGAGGGAGCCTATCCATTTGGTGATTTGTCTGGAGTCGGGGTAGCTTTTAAGGTGGCAACAGCTTTACTTGAAG AAATTCCCGAAGAATTCCTTGACTTGTATGCAATTGGAACGACCGCTGATTTGGTTTCAATGACCGATGAAAATCGTTTT TTGGTAAAGATGGGATTAGAAATGATACCCAACACCCAGAGAATTGGCTTACAGAAGTTAATCGAAATATCAGGTGTTGA TGTAAGTCATTTCGACGAGCAAGACATTGGTTTTACTGTGGCTCCGAGAATTAATGCTGTTGGTAGATTAGAAAATGCCA GCCGAGCAGTAGAACTATTAACAACTTTTGATGAAGAAGAAGCCACAACAATTGCACAAGAGATTAATAAGATTAATTCG AAGCGTCAGGGATTAGTTAGTGATATTTACACTGAAGCTGAAGAAATTGCCCTTGATGATGAGCATGCTAGCCGCCAAAC GCTAGTTATTGCTGGACACGACTGGCATCAAGGAGTCTTGGGGATTGTTGCTAGTCGAATTGTCGAACGAACTAATAAAC CGACGATTGTTCTTAGTGATCAAGGTGGTAATGGAATTTATAAGGGGTCTGGACGTAGTGTTGCAGCTCTAAATTTATTT GAAGCTATTAATCCTATCCGAGAAAAGTGTGTTGGGTTTGGTGGACATCATATGGCTATTGGAGTTACCGTAGAGGCTGA CCAGCTTGCAACTCTAACTGATCAATTAGAAAAGGCGGCTCAATTAGTTAATTTAGATTTTAAGCAACAGCCGCAATTAC AAATTGATTTAAAAGTAAACATTGAAGAATTAACTGAAAAGTTAGTTTCAGAAATGAAAATTTTAGGGCCGTTTGGGATG AATAACCCAGTACCTAAGTTTGAACTTGAAGACGTTCGTGTTAAAGAAGCAAAGGCAATTGGTAAAGATGGGGCACATTT AAAGTTCACGCTTGATGATGGTAATCAAAATATCAATGCTATTGCGTTTAAACGGGGTGAGTTAGCTGATGTCTTAAATA ATGTTGCAAATCCCATTAGTTTGGTGGGAACCATCAATACTAACGAGTGGCGTGGTAATGTTTCGGTTCAATTTATGACG GATGATATCAAGATCGATGGTTTGCAAGTTATTGATCAACGAACCTCAAATTTGAATAAAAACTTATTTAAGAGTGACAT GCAATATGTCTTTTTTAACCAAAAGTTAATGGATTTGATTCAAAGTCAAAATCTTAATCGTAAATTCTATTATTACAGTT CGTCAGCAATTGAGAAAAATGACACGATTGTATTAGTAGATTGTCCTGATAATCTAGCCAAAATGGCCGAACTTATCAAG GCTACGCAGCCGCAAAGAATCATTACTTATTTCTTTCATAACGTCGATTTCTACGCTAGTGGCATGCCCAGTCGGATTGA ATTTAAGCAGATGTTTGGTATTGTTAAAACTCAAAAATTAACTAAAACAGATATCATGCAACTTGGACCAAAATTAAAAA TAGATCAAGAGAAGATCAACTTCATGATAAAAGTGTTTTTTGAGTTGAATTTTGTTAAAATAGAAAACGGACTTCTTTTC ATCAATGCTGAAGCAGAACAGCACCAACTTACTGAGGCACCGGCGTATAAGAAGCGTGAAGAATTAATTCAAACTCAGGA AAAATTACTCTATAGTAGTGGTGATGAACTATCAGCTATAGTTGAAAGACTGATGAATGTTGATAACAAAGGAGTGTCGT AA
Upstream 100 bases:
>100_bases ATAATGGGAGTGGGAGCGATTATGTACACCTTATTTCCTAAAATGGGTGATTTAATCGTTAATAGTCCCTTGATTAATCG AAAGTAGTTGGAGTTAATTA
Downstream 100 bases:
>100_bases AATGACATTAGACTTACATGACTACGTTGCAAGTATTCAAGATTTCCCAGAAAAAGGTGTAACATTCCGTGATATTTCTC CTTTAATGGAAAATGGTGAG
Product: exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 773; Mature: 773
Protein sequence:
>773_residues MKDNRFNWQVSKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDPMLLHDMQKALDRIFVAIESN EKILVYGDYDADGVTSTTIMYETLDQLGANVQYFVPDRFKDGYGPNLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAED QGTNVIVTDHHEIPEVLPEAYAIIHPRHPEGAYPFGDLSGVGVAFKVATALLEEIPEEFLDLYAIGTTADLVSMTDENRF LVKMGLEMIPNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLENASRAVELLTTFDEEEATTIAQEINKINS KRQGLVSDIYTEAEEIALDDEHASRQTLVIAGHDWHQGVLGIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLF EAINPIREKCVGFGGHHMAIGVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIEELTEKLVSEMKILGPFGM NNPVPKFELEDVRVKEAKAIGKDGAHLKFTLDDGNQNINAIAFKRGELADVLNNVANPISLVGTINTNEWRGNVSVQFMT DDIKIDGLQVIDQRTSNLNKNLFKSDMQYVFFNQKLMDLIQSQNLNRKFYYYSSSAIEKNDTIVLVDCPDNLAKMAELIK ATQPQRIITYFFHNVDFYASGMPSRIEFKQMFGIVKTQKLTKTDIMQLGPKLKIDQEKINFMIKVFFELNFVKIENGLLF INAEAEQHQLTEAPAYKKREELIQTQEKLLYSSGDELSAIVERLMNVDNKGVS
Sequences:
>Translated_773_residues MKDNRFNWQVSKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDPMLLHDMQKALDRIFVAIESN EKILVYGDYDADGVTSTTIMYETLDQLGANVQYFVPDRFKDGYGPNLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAED QGTNVIVTDHHEIPEVLPEAYAIIHPRHPEGAYPFGDLSGVGVAFKVATALLEEIPEEFLDLYAIGTTADLVSMTDENRF LVKMGLEMIPNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLENASRAVELLTTFDEEEATTIAQEINKINS KRQGLVSDIYTEAEEIALDDEHASRQTLVIAGHDWHQGVLGIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLF EAINPIREKCVGFGGHHMAIGVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIEELTEKLVSEMKILGPFGM NNPVPKFELEDVRVKEAKAIGKDGAHLKFTLDDGNQNINAIAFKRGELADVLNNVANPISLVGTINTNEWRGNVSVQFMT DDIKIDGLQVIDQRTSNLNKNLFKSDMQYVFFNQKLMDLIQSQNLNRKFYYYSSSAIEKNDTIVLVDCPDNLAKMAELIK ATQPQRIITYFFHNVDFYASGMPSRIEFKQMFGIVKTQKLTKTDIMQLGPKLKIDQEKINFMIKVFFELNFVKIENGLLF INAEAEQHQLTEAPAYKKREELIQTQEKLLYSSGDELSAIVERLMNVDNKGVS >Mature_773_residues MKDNRFNWQVSKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDPMLLHDMQKALDRIFVAIESN EKILVYGDYDADGVTSTTIMYETLDQLGANVQYFVPDRFKDGYGPNLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAED QGTNVIVTDHHEIPEVLPEAYAIIHPRHPEGAYPFGDLSGVGVAFKVATALLEEIPEEFLDLYAIGTTADLVSMTDENRF LVKMGLEMIPNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLENASRAVELLTTFDEEEATTIAQEINKINS KRQGLVSDIYTEAEEIALDDEHASRQTLVIAGHDWHQGVLGIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLF EAINPIREKCVGFGGHHMAIGVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIEELTEKLVSEMKILGPFGM NNPVPKFELEDVRVKEAKAIGKDGAHLKFTLDDGNQNINAIAFKRGELADVLNNVANPISLVGTINTNEWRGNVSVQFMT DDIKIDGLQVIDQRTSNLNKNLFKSDMQYVFFNQKLMDLIQSQNLNRKFYYYSSSAIEKNDTIVLVDCPDNLAKMAELIK ATQPQRIITYFFHNVDFYASGMPSRIEFKQMFGIVKTQKLTKTDIMQLGPKLKIDQEKINFMIKVFFELNFVKIENGLLF INAEAEQHQLTEAPAYKKREELIQTQEKLLYSSGDELSAIVERLMNVDNKGVS
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=578, Percent_Identity=32.0069204152249, Blast_Score=261, Evalue=1e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 86703; Mature: 86703
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDNRFNWQVSKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDP CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCH MLLHDMQKALDRIFVAIESNEKILVYGDYDADGVTSTTIMYETLDQLGANVQYFVPDRFK HHHHHHHHHHHHEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC DGYGPNLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAEDQGTNVIVTDHHEIPEVLPEA CCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHEEEECCCCCEEEEECCHHHHHHHHHH YAIIHPRHPEGAYPFGDLSGVGVAFKVATALLEEIPEEFLDLYAIGTTADLVSMTDENRF EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHEECCCCEE LVKMGLEMIPNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLENASRAVELL EEEECHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHCCCHHHHHHHHH TTFDEEEATTIAQEINKINSKRQGLVSDIYTEAEEIALDDEHASRQTLVIAGHDWHQGVL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHH GIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLFEAINPIREKCVGFGGHHMAI HHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE GVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIEELTEKLVSEMKILGPFGM EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC NNPVPKFELEDVRVKEAKAIGKDGAHLKFTLDDGNQNINAIAFKRGELADVLNNVANPIS CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHCCCCEE LVGTINTNEWRGNVSVQFMTDDIKIDGLQVIDQRTSNLNKNLFKSDMQYVFFNQKLMDLI EEEEECCCCCCCCEEEEEEECCEEECCHHHHHHHHHHCCHHHHHHCCHHEEECHHHHHHH QSQNLNRKFYYYSSSAIEKNDTIVLVDCPDNLAKMAELIKATQPQRIITYFFHNVDFYAS HCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEC GMPSRIEFKQMFGIVKTQKLTKTDIMQLGPKLKIDQEKINFMIKVFFELNFVKIENGLLF CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHEEEEEEEEEEEEECCEEE INAEAEQHQLTEAPAYKKREELIQTQEKLLYSSGDELSAIVERLMNVDNKGVS EECCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKDNRFNWQVSKLDDVDIDQLASETKLSQTMVKIMVARGFKTGEDILSFIDEDMSIVHDP CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCH MLLHDMQKALDRIFVAIESNEKILVYGDYDADGVTSTTIMYETLDQLGANVQYFVPDRFK HHHHHHHHHHHHEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC DGYGPNLKKYQHFINDEGVQLIITVDNGVAGNEAIKFAEDQGTNVIVTDHHEIPEVLPEA CCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHEEEECCCCCEEEEECCHHHHHHHHHH YAIIHPRHPEGAYPFGDLSGVGVAFKVATALLEEIPEEFLDLYAIGTTADLVSMTDENRF EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHEECCCCEE LVKMGLEMIPNTQRIGLQKLIEISGVDVSHFDEQDIGFTVAPRINAVGRLENASRAVELL EEEECHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHCCCHHHHHHHHH TTFDEEEATTIAQEINKINSKRQGLVSDIYTEAEEIALDDEHASRQTLVIAGHDWHQGVL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHH GIVASRIVERTNKPTIVLSDQGGNGIYKGSGRSVAALNLFEAINPIREKCVGFGGHHMAI HHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE GVTVEADQLATLTDQLEKAAQLVNLDFKQQPQLQIDLKVNIEELTEKLVSEMKILGPFGM EEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCC NNPVPKFELEDVRVKEAKAIGKDGAHLKFTLDDGNQNINAIAFKRGELADVLNNVANPIS CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHCCCCEE LVGTINTNEWRGNVSVQFMTDDIKIDGLQVIDQRTSNLNKNLFKSDMQYVFFNQKLMDLI EEEEECCCCCCCCEEEEEEECCEEECCHHHHHHHHHHCCHHHHHHCCHHEEECHHHHHHH QSQNLNRKFYYYSSSAIEKNDTIVLVDCPDNLAKMAELIKATQPQRIITYFFHNVDFYAS HCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEC GMPSRIEFKQMFGIVKTQKLTKTDIMQLGPKLKIDQEKINFMIKVFFELNFVKIENGLLF CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHEEEEEEEEEEEEECCEEE INAEAEQHQLTEAPAYKKREELIQTQEKLLYSSGDELSAIVERLMNVDNKGVS EECCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]