Click here to switch to the map view.

The map label for this gene is ybbH [H]

Identifier: 116492804

GI number: 116492804

Start: 1032326

End: 1033168

Strand: Reverse

Name: ybbH [H]

Synonym: PEPE_1041

Alternate gene names: 116492804

Gene position: 1033168-1032326 (Counterclockwise)

Preceding gene: 116492805

Following gene: 116492802

Centisome position: 56.38

GC content: 36.65

Gene sequence:

>843_bases
ATGAAAAATATTTTATTTACATTGAGTAACGATTTTGAAAAATTTTCAAGATCTGAGCAGAAAGTAGCCCGATTTATGAT
CGATTATCCGCGAGAGGTGATTCAGATGAACGCCGAAGAAATTTCTGATCGAACTCAAGTAAGTCCGGCGACTGTAGTTA
GGTTAGCAAAAAAAATTTGTAAGAGTGGTTTGCCAGGTTTAAAGATTCAAGTTGCGTCAGAAATAAAGGTAGATGATTCC
TTGTATACCGAAGTTAATCCATCGGATGACTTGGATGTTATGAAACATAAGCTGGAGTTTCGAATAAGTCATGCAATCGG
ACAAACCAACCAAATATTACTTAAAAATGATGTAAAAAAAGCAACCGATATTGTTGAGCAAGCAGATGATATCTACGTAT
TTGGGATGGGCGCATCTAATTTAGTGGCAGAGGATTTTCAACAAAAATTTATTCGAATTGGAAAGTCTGTCATCCAAACG
TTAGATACACATCTAATGGCGGTCGGATTAGCCAAACCTAATTCAGTATTAATTGTTGTTTCAGATTCAGGTGAGACTAA
GGAAAGTTGCCACATAACCAGAGTAGCTAGTTCGCTAAACATACCAATAATCGCTATTACGCATGAACGTAACAGTACTA
TCGCAAAAAATAGTACTGTTACGTTAACGCACGATGACGGTGGTGAAAGTGGAGTGTTACGGACTGCTGCAACCACGTCA
TTGTTAGCTCAATTGTACGTGGTTGATTTACTCTATTATGCATATTTAACCCAAGATTTTAGTAATAATAAGGCCCGTTT
AGTTAAGTCCAAGACGATTATTGCTGAAAATTTTGGTAAGTAA

Upstream 100 bases:

>100_bases
TAGAAGATCGGATATTTTCCGGTCTTTTTGGATATATTACTATAATTTATAATTAGGAGCTAATGTTAAATCTGACAAAT
ATGTGGGAGTTCAAAGTTTT

Downstream 100 bases:

>100_bases
GGGATTAGAGAACGAATATGTAATTAAAAGATAATTCTTAAAAAGACCAATTCGTAAGAATTGGCCTTTTATTATAAATA
TATTATTAGAACCCGTCGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MKNILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKICKSGLPGLKIQVASEIKVDDS
LYTEVNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKKATDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQT
LDTHLMAVGLAKPNSVLIVVSDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAATTS
LLAQLYVVDLLYYAYLTQDFSNNKARLVKSKTIIAENFGK

Sequences:

>Translated_280_residues
MKNILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKICKSGLPGLKIQVASEIKVDDS
LYTEVNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKKATDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQT
LDTHLMAVGLAKPNSVLIVVSDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAATTS
LLAQLYVVDLLYYAYLTQDFSNNKARLVKSKTIIAENFGK
>Mature_280_residues
MKNILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKICKSGLPGLKIQVASEIKVDDS
LYTEVNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKKATDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQT
LDTHLMAVGLAKPNSVLIVVSDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAATTS
LLAQLYVVDLLYYAYLTQDFSNNKARLVKSKTIIAENFGK

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=258, Percent_Identity=27.1317829457364, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788159, Length=257, Percent_Identity=26.0700389105058, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082130, Length=283, Percent_Identity=21.9081272084806, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31041; Mature: 31041

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKIC
CCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHCCCHHHHHHHHHHHH
KSGLPGLKIQVASEIKVDDSLYTEVNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKK
HCCCCCEEEEEECCEEECCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHH
ATDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQTLDTHLMAVGLAKPNSVLIVV
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEE
SDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAATTS
ECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEECCCEEEEEECCCCCCCEEHHHHHHH
LLAQLYVVDLLYYAYLTQDFSNNKARLVKSKTIIAENFGK
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCC
>Mature Secondary Structure
MKNILFTLSNDFEKFSRSEQKVARFMIDYPREVIQMNAEEISDRTQVSPATVVRLAKKIC
CCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHCCCHHHHHHHHHHHH
KSGLPGLKIQVASEIKVDDSLYTEVNPSDDLDVMKHKLEFRISHAIGQTNQILLKNDVKK
HCCCCCEEEEEECCEEECCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHH
ATDIVEQADDIYVFGMGASNLVAEDFQQKFIRIGKSVIQTLDTHLMAVGLAKPNSVLIVV
HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEE
SDSGETKESCHITRVASSLNIPIIAITHERNSTIAKNSTVTLTHDDGGESGVLRTAATTS
ECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEECCCEEEEEECCCCCCCEEHHHHHHH
LLAQLYVVDLLYYAYLTQDFSNNKARLVKSKTIIAENFGK
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]