Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

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The map label for this gene is yvdK [H]

Identifier: 116492730

GI number: 116492730

Start: 970921

End: 973173

Strand: Reverse

Name: yvdK [H]

Synonym: PEPE_0967

Alternate gene names: 116492730

Gene position: 973173-970921 (Counterclockwise)

Preceding gene: 116492731

Following gene: 116492729

Centisome position: 53.11

GC content: 38.57

Gene sequence:

>2253_bases
ATGATTCGAACATTTAATATAGCACCTTGGCACATTGAAACTAATCAATGGGATCCCGAAAATAAAAGAATTCAAGAATC
AATCACCAGCCTAGGCAATGAAAATCTGGGTATGCGAGGATTTTATGAAGAGGGTTACTCCGGAGACACTTTAGAAGGAA
TTTATCTCGGAGGAGTTTGGTATCCAGATAAAACTCGTGTTGGTTGGTGGAAAAATGGTTATCCGAAGTATTTTGGTAAG
GTAATCAACTCGGTCAATTTTATGAAACTTTTAATCACGGTAAACGGTGAACAATTAGATTTGAACCATCAAGTACCGCA
AGACTTTAGCCTAGACTTAGATATGCAAAAAGCTATTTTAACTCGGAGTTTTAAGGTTGAAATTGGTGGCGTAAAACTGA
AATTTATTTTTGAACGTTTCGTGAGTGCCGCACTTAAAGAATTAGTTGGACAACGTCTGACGATTAAAAATTTATCTGAT
AGCAAAGCTGATATTGAAGTTATTAGTGCTATTGATGCTGATGTTTACAACGAAGATTCAAATTACGGTGAACAATTTTG
GGACGTACTTGCTAAAAGTAATCAGCAAAACGAAGTGAAAATGCTTGCCAAAACCAAGGAAAATGATTTTGGCACTGAAC
GTTTTACGGTAGGTTTTGATACGACCATCAAGACGGATATGGACTATGTCGGTGATGTAGAAAACGATCAATCGATCGGT
CAAAAGTATCACATAGCTTTACAACCTGCTACAACTAGCATAATGGAGAAAAGAACCATTTTTGTCTCATCTAGAGATTT
TGGTACAGTCGATGAAATAAACGAACGGATGCAGGAATTAACGCATACGATTAAGACGCAAAGTTTCGAGCAACTGTTAG
AACAGCATGTTCAAGAATGGGAACAAAGATGGCAAAAATCAGACATTGAAATCAATGGTGATGCAGAAGCCCAACAAGGA
ATTCGGTTTAATTTATTCCAGCTCTTTTCTACCTATTATGGTAACGATGCGCGCTTAAATATTGGTCCTAAAGGTTTTAC
TGGTGAAAAATACGGTGGTGCAACCTACTGGGATACTGAAGCATTTGCCGTACCGGTATACCTAGGTGTATCGGAGTCTA
AGGTCGTTCGTAACTTGTTAAAGTACCGTTACAATCAGCTGGATGGCGCCTTTGTAAATGCTAGGGAACAGGGGCTTAAA
GGAGCTTTATATCCCATGGTGACTTTTAACGGGATAGAATGCCATAACGAATGGGAAATCACTTTCGAAGAAATTCATCG
TAATGGTGATATTGCGTTTGCTATCTACAATTACACCCGTTATACAGGTGATCAATCCTACGTCCTTAACGAAGGGGCCG
AAGTTTTAACCGAAATTGCTCGTTTTTGGGCTGATCGCGTCCATTTTTCAGCAGAAAATGGACAATATATGATTGCTGGA
GTAACTGGTCCTGACGAATATCAAAATAACGTTGATAACAATTGGTATACCAATTTATTGGCGCGGTGGACACTCCGTTA
TACCTTGGAAATTTTGGATCAAATCGAAGAGGATGTTGCCAAAAAAGTTAATGTATCGTCAGCAGAACGTCAACACTGGC
AAGAAATTATCGATAATATGTATTTACCAGAAGATTCTAAGCGCGGAATCTTTGTCGAAAATGATGGTTTCTTAAATAAG
GATTTGAAGCCAGTTAGTTCATTGCCAAAGGAACAATTACCGCTAAACCAAAATTGGTCTTGGGATAAAATTTTACGTTC
ACCATATATTAAACAAGGGGATGTTCTTCAAGGAATTTGGGATTTCATTGACGATTTTTCAATGGAAGAAAAACAGCGGA
ATTTTGATTTTTATGAACCACTAACTGTGCATGAATCTAGTTTATCGGCTGCTATTCACTCGGTTCTTGCGGCTGACTTA
CACAAAGAGGCTCAAGCCGTTGAGATGTATGAACGTACCGCCCGCCTAGATTTAGATAATTATAATAATGATACTGCGGA
TGGTCTGCATATTACGTCCATGACGGGTGGATGGTTAGCGATTGTTCAAGGTTTTGCAGGAATGCGGGTCCGTAATGATC
AGCTGCATTATGCCCCATTCTTACCGAAAAATTGGACATCTTACCGATTTAGACAACAATTCCGCGGAAGAGTAATTGAA
GTTAGTGTCGATAAAAGTGCAACAAATCTTAAATTGATTAGTGGTAGCCCACTAAGCGTTGATTTAAATGGTAAGAAAGT
TGAATTAAGCTGA

Upstream 100 bases:

>100_bases
TTCCTACTTGCTGGTGCAGTAATGCTTTTAGGAGCCTTCGCCGTAGGAACAATCAAAGAAACTTTTGCTGAATAATTAAA
TATAGACAAGGAGAACAATC

Downstream 100 bases:

>100_bases
GTGGAGGAATTAGGAATGAAATTTTCAGATATAAAGGGATTCGCTTTTGACCTTGATGGGGTTATTGCAGATACTGCGAA
GTTTCACAGTCAGGCTTGGC

Product: maltose phosphorylase

Products: D-glucose; beta-D-glucose 1-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 750; Mature: 750

Protein sequence:

>750_residues
MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVWYPDKTRVGWWKNGYPKYFGK
VINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAILTRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSD
SKADIEVISAIDADVYNEDSNYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG
QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEWEQRWQKSDIEINGDAEAQQG
IRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTEAFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLK
GALYPMVTFNGIECHNEWEITFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG
VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNMYLPEDSKRGIFVENDGFLNK
DLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIWDFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADL
HKEAQAVEMYERTARLDLDNYNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE
VSVDKSATNLKLISGSPLSVDLNGKKVELS

Sequences:

>Translated_750_residues
MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVWYPDKTRVGWWKNGYPKYFGK
VINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAILTRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSD
SKADIEVISAIDADVYNEDSNYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG
QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEWEQRWQKSDIEINGDAEAQQG
IRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTEAFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLK
GALYPMVTFNGIECHNEWEITFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG
VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNMYLPEDSKRGIFVENDGFLNK
DLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIWDFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADL
HKEAQAVEMYERTARLDLDNYNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE
VSVDKSATNLKLISGSPLSVDLNGKKVELS
>Mature_750_residues
MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVWYPDKTRVGWWKNGYPKYFGK
VINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAILTRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSD
SKADIEVISAIDADVYNEDSNYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG
QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEWEQRWQKSDIEINGDAEAQQG
IRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTEAFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLK
GALYPMVTFNGIECHNEWEITFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG
VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNMYLPEDSKRGIFVENDGFLNK
DLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIWDFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADL
HKEAQAVEMYERTARLDLDNYNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE
VSVDKSATNLKLISGSPLSVDLNGKKVELS

Specific function: Unknown

COG id: COG1554

COG function: function code G; Trehalose and maltose hydrolases (possible phosphorylases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 65 family [H]

Homologues:

Organism=Homo sapiens, GI187829418, Length=618, Percent_Identity=22.0064724919094, Blast_Score=127, Evalue=5e-29,
Organism=Escherichia coli, GI1787575, Length=756, Percent_Identity=28.968253968254, Blast_Score=286, Evalue=3e-78,
Organism=Saccharomyces cerevisiae, GI6325283, Length=315, Percent_Identity=24.7619047619048, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24583760, Length=299, Percent_Identity=27.7591973244147, Blast_Score=97, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR012341
- InterPro:   IPR011013
- InterPro:   IPR005194
- InterPro:   IPR005195
- InterPro:   IPR005196
- InterPro:   IPR017045 [H]

Pfam domain/function: PF03633 Glyco_hydro_65C; PF03632 Glyco_hydro_65m; PF03636 Glyco_hydro_65N [H]

EC number: 2.4.1.8

Molecular weight: Translated: 86341; Mature: 86341

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVW
CCEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
YPDKTRVGWWKNGYPKYFGKVINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAIL
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHH
TRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSDSKADIEVISAIDADVYNEDS
CEEEEEEECCEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCHHCCCCC
NYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG
CHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEECCEEECCCHHCCCCCCCHHCC
QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEW
CEEEEEECCCHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQRWQKSDIEINGDAEAQQGIRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTE
HHHHCCCCEEECCCCHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEECCC
AFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLKGALYPMVTFNGIECHNEWEI
CEEEEEEECCCHHHHHHHHHHHHHHHCCCCEECCHHHCCCCEEEEEEEECCEEECCCCCE
TFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG
EHHHHHCCCCEEEEEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHEEEECCCCEEEEE
VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNM
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
YLPEDSKRGIFVENDGFLNKDLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIW
CCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHH
DFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADLHKEAQAVEMYERTARLDLDN
HHHHCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE
CCCCCCCCEEEEECCCHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHCCEEEE
VSVDKSATNLKLISGSPLSVDLNGKKVELS
EEECCCCCEEEEEECCCEEEECCCCEEEEC
>Mature Secondary Structure
MIRTFNIAPWHIETNQWDPENKRIQESITSLGNENLGMRGFYEEGYSGDTLEGIYLGGVW
CCEEECCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
YPDKTRVGWWKNGYPKYFGKVINSVNFMKLLITVNGEQLDLNHQVPQDFSLDLDMQKAIL
CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHH
TRSFKVEIGGVKLKFIFERFVSAALKELVGQRLTIKNLSDSKADIEVISAIDADVYNEDS
CEEEEEEECCEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCHHCCCCC
NYGEQFWDVLAKSNQQNEVKMLAKTKENDFGTERFTVGFDTTIKTDMDYVGDVENDQSIG
CHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEECCEEECCCHHCCCCCCCHHCC
QKYHIALQPATTSIMEKRTIFVSSRDFGTVDEINERMQELTHTIKTQSFEQLLEQHVQEW
CEEEEEECCCHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQRWQKSDIEINGDAEAQQGIRFNLFQLFSTYYGNDARLNIGPKGFTGEKYGGATYWDTE
HHHHCCCCEEECCCCHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEECCC
AFAVPVYLGVSESKVVRNLLKYRYNQLDGAFVNAREQGLKGALYPMVTFNGIECHNEWEI
CEEEEEEECCCHHHHHHHHHHHHHHHCCCCEECCHHHCCCCEEEEEEEECCEEECCCCCE
TFEEIHRNGDIAFAIYNYTRYTGDQSYVLNEGAEVLTEIARFWADRVHFSAENGQYMIAG
EHHHHHCCCCEEEEEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHEEEECCCCEEEEE
VTGPDEYQNNVDNNWYTNLLARWTLRYTLEILDQIEEDVAKKVNVSSAERQHWQEIIDNM
CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
YLPEDSKRGIFVENDGFLNKDLKPVSSLPKEQLPLNQNWSWDKILRSPYIKQGDVLQGIW
CCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCCHHHHHH
DFIDDFSMEEKQRNFDFYEPLTVHESSLSAAIHSVLAADLHKEAQAVEMYERTARLDLDN
HHHHCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YNNDTADGLHITSMTGGWLAIVQGFAGMRVRNDQLHYAPFLPKNWTSYRFRQQFRGRVIE
CCCCCCCCEEEEECCCHHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHCCEEEE
VSVDKSATNLKLISGSPLSVDLNGKKVELS
EEECCCCCEEEEEECCCEEEECCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: maltose; phosphate

Specific reaction: maltose + phosphate = D-glucose + beta-D-glucose 1-phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]