Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

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The map label for this gene is 116492156

Identifier: 116492156

GI number: 116492156

Start: 398927

End: 401290

Strand: Direct

Name: 116492156

Synonym: PEPE_0353

Alternate gene names: NA

Gene position: 398927-401290 (Clockwise)

Preceding gene: 116492155

Following gene: 116492160

Centisome position: 21.77

GC content: 39.55

Gene sequence:

>2364_bases
ATGACAGATTATTCATCAAAAGAATATTTTGACAAGCTTGAAAAATTTTGGCGTGCTGCTAACTATCTTTCAGTAGGACA
ATTATATTTAAAAGACAATCCGCTATTAAAACGCGACATTAAACCAGAAGATGTAAAAGTTCATCCAATTGGACACTGGG
GAACAATTCCTGGACAAAACTACATCTATGCTCATTTAAACCGTGTTATCAACAAATACGGTGTAAACATGTTTTATGTT
GAAGGACCAGGTCATGGTGGCCAAGTTATGGTATCTAACTCATACCTTGATGGTTCATACACTGAAGCATACCCAGCTAT
CACTCAAGATGAAGAAGGTATGAAGAAACTCTTCAAACAATTCTCATGGCCCGGTGGGGTTGCTTCACATGCTGCTCCTG
TAACACCAGGTTCAATTCATGAAGGTGGGGAACTTGGTTACTCATTATCACATGGTGTTGGTGCTATCTTAGATAACCCA
GACCAAATCGCTGCTGTTGTAGTTGGTGATGGTGAAGCTGAAACAGGTCCTTTGGCTGCTTCATGGCAACATAACCGTTT
CATCAACCCTATTACTGATGGTGCTGTTCTTCCTATTTTGGATATTAACGGCTATAAGTTAAGTAACCCTTCACTTACAT
CACGTATGTCAGATGAAGAATTAACTGAATTCTTCCATGGTCAACATTGGGACCCATACTTTGTTGAAGGTGATGATTCA
GAAGCTATGGATCCTAAGATGGCTGAAGTAATGGACAAGGCTATCGAAAAGATTCAAGAAATTCAAAAGAATGCTCGTGA
AAACCACGATGAAACTATGCCATACTGGCCAGTAATTGTATTCCGTTCACCTAAGGGTTGGACAGGTCCAAAGACTTGGG
ATAACAAGGTTATTGAAGGTACATTCCGTGCTCATCAAATTCCAATCCCAGTAGACCAAAAGAACCTTGAACATGTTGAT
GCTTTGATTGACTGGATGAAGTCATACAAGCCAGAAGAACTATTTGATGAAAATGGTCGCGTATTACCTGAAATTGCAGA
AATTGCACCTAAGGGTGAAAAACGTATGGCATCTAACCCAATCACAAACGGTGGAGTTAACCCAACTGACTTGAACTTGC
CAGATTATCGTGACTACGCTGTTGATACAACAAAACGTGGACAAAACATCAAACAAGATATGTTGGTATGGTCAGACTAC
TTACGCGATGTTATAACTAAGAACCCAACTAACTTCAGAATGTTTGGTCCTGATGAAACAATGTCAAACCGTCTATATGG
TTTGTTTGAAGTTACAAATCGTCAATTTGTTGCTCCAATCAAGAAGGACTGGGATGAAGCACTTGCTCCTGAAGGTCGTA
TTCTTGATGCTCAACTTTCAGAACATTCAGCTGAAGGTTGGCTAGAAACATACACATTGACTGGTCGTCATGGTATCTTC
ACTAGTTACGAAGCATTCCTACGCGTTGTGGATTCAATGATTACACAACACTTCAAGTGGTTACGTAAGGCTGATGAATT
AGATTGGCGTAATGATTATCCATCATTGAACCTTGTATCTACATCAACTAGTTTCCAACAAGATCACAATGGTTACACTC
ACCAAGATCCAGGTCTTTTGACTCACTTGGCTGAAAAGAAACCAGAATTCATTCGTGAATACTTGCCAGCTGATGCAAAC
TCATTGCTTGCTATTAGCCCACTAGTTATGAACGATCGTAACAAGATCAACTTGATTATTGCTTCTAAGCAACCTCGTCC
TCAATTCTACTCAATGGAAGAAGCAGAAGTTCTTGCTAAGAACGGTTTGGGTATTATTGACTGGGCAAGCACAACTAATG
GTGAAGAACCAGACGTTGTCTTCGCTGCTGCTGGTACAGAACCAAATATGGAAAGTTTAGCTGCAATCAACATCTTGCAT
GATAACTTCCCAGACTTGAAGATTCGTTTCATCAACGTTGTTGACTTATTGAAACTTCAAAGTCCTAAGGTTAACCCTAA
TGGTCTAAGTGATGAAGAATTTGATCGTTACTTTACTAAGGACAAACCAGTTATCTTTACTTTCCATGGTTTCGAAGACT
TAATTCGTTCAATCTTCTTTGACCGTCATAACCATAACTTACACGTTCATGGTTACCGTGAAGAAGGGGACATTACAACT
CCATTCGACATGCGAGTTCTTAACGAACTAGATCGTTTCCACTTAGCACAAGATACAATCAATTCTATTCCAGAATTTGC
TGAAAAGGGTGCAGACTTCTCTCAACAAATGGATAACACACTTGAACGTCATTACCAATACATTCGTGATAACGGTGATG
ATCTTCCAGAAGTTACTAACTGGACTTGGAAAGATGTTAACTAA

Upstream 100 bases:

>100_bases
GTATCAATTTAAAAAATGATTGACCTTTTTTGAGAAAGCGGTTATAATAAATTCATAAATTAAAAACAACCTATTTTTCG
CTCACGAAAGGAAGAGTACA

Downstream 100 bases:

>100_bases
TTAAATCAAAACAAAAAAGCTGAAAGCTTTGCCAATAGGGCATAGCTTCCAGCTTTTTTATTTAGTTAAAAAATTAAAAT
AATCGGGTATAGGAGCAGTG

Product: putative phosphoketolase

Products: acetyl phosphate; D-glyceraldehyde 3-phosphate; H2O

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 786

Protein sequence:

>787_residues
MTDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQNYIYAHLNRVINKYGVNMFYV
EGPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQFSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNP
DQIAAVVVGDGEAETGPLAASWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDS
EAMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEGTFRAHQIPIPVDQKNLEHVD
ALIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNPITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDY
LRDVITKNPTNFRMFGPDETMSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIF
TSYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLLTHLAEKKPEFIREYLPADAN
SLLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAKNGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILH
DNFPDLKIRFINVVDLLKLQSPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT
PFDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTNWTWKDVN

Sequences:

>Translated_787_residues
MTDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQNYIYAHLNRVINKYGVNMFYV
EGPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQFSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNP
DQIAAVVVGDGEAETGPLAASWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDS
EAMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEGTFRAHQIPIPVDQKNLEHVD
ALIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNPITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDY
LRDVITKNPTNFRMFGPDETMSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIF
TSYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLLTHLAEKKPEFIREYLPADAN
SLLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAKNGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILH
DNFPDLKIRFINVVDLLKLQSPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT
PFDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTNWTWKDVN
>Mature_786_residues
TDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQNYIYAHLNRVINKYGVNMFYVE
GPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQFSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNPD
QIAAVVVGDGEAETGPLAASWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDSE
AMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEGTFRAHQIPIPVDQKNLEHVDA
LIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNPITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDYL
RDVITKNPTNFRMFGPDETMSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIFT
SYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLLTHLAEKKPEFIREYLPADANS
LLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAKNGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILHD
NFPDLKIRFINVVDLLKLQSPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITTP
FDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTNWTWKDVN

Specific function: Unknown

COG id: COG3957

COG function: function code G; Phosphoketolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the XFP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PHK_PEDPA (Q03H73)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_803891.1
- STRING:   Q03H73
- GeneID:   4418459
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0353
- NMPDR:   fig|278197.10.peg.327
- eggNOG:   COG3957
- HOGENOM:   HBG285855
- OMA:   VIDETQH
- ProtClustDB:   PRK05261
- BioCyc:   PPEN278197:PEPE_0353-MONOMER
- HAMAP:   MF_01403
- InterPro:   IPR009014
- InterPro:   IPR005593
- InterPro:   IPR018969
- InterPro:   IPR019790
- InterPro:   IPR018970
- InterPro:   IPR019789
- PIRSF:   PIRSF017245

Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N; SSF52922 Transketo_C_like

EC number: 4.1.2.9

Molecular weight: Translated: 89725; Mature: 89594

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS60002 PHOSPHOKETOLASE_1; PS60003 PHOSPHOKETOLASE_2; PS00187 TPP_ENZYMES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQN
CCCCCHHHHHHHHHHHHHHHCHHHHCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC
YIYAHLNRVINKYGVNMFYVEGPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQ
HHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
FSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNPDQIAAVVVGDGEAETGPLAA
CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCEEECCCCCEEEEEEECCCCCCCCEEE
SWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDS
CCCCCCCCCCCCCCCEEEEEECCCEEECCCCHHHCCCHHHHHHHHCCCCCCCEEEECCCC
EAMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEC
TFRAHQIPIPVDQKNLEHVDALIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNP
CHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHCCCCCHHHHCCC
ITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDYLRDVITKNPTNFRMFGPDET
CCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHH
MSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIF
HHCCEEEEEEECCCEEECHHHHHHHHHHCCCCCEEECHHHHCCCCCCEEEEEECCCCCCH
TSYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCHHH
THLAEKKPEFIREYLPADANSLLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAK
HHHHHCCHHHHHHHCCCCCCCEEEECCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHH
NGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILHDNFPDLKIRFINVVDLLKLQ
CCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHEEEHHHCCCCCCEEEEEHHHHHHHHC
SPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT
CCCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
PFDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
WTWKDVN
CEECCCC
>Mature Secondary Structure 
TDYSSKEYFDKLEKFWRAANYLSVGQLYLKDNPLLKRDIKPEDVKVHPIGHWGTIPGQN
CCCCHHHHHHHHHHHHHHHCHHHHCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC
YIYAHLNRVINKYGVNMFYVEGPGHGGQVMVSNSYLDGSYTEAYPAITQDEEGMKKLFKQ
HHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
FSWPGGVASHAAPVTPGSIHEGGELGYSLSHGVGAILDNPDQIAAVVVGDGEAETGPLAA
CCCCCCCCCCCCCCCCCCCCCCCCCCEEHHCCCCEEECCCCCEEEEEEECCCCCCCCEEE
SWQHNRFINPITDGAVLPILDINGYKLSNPSLTSRMSDEELTEFFHGQHWDPYFVEGDDS
CCCCCCCCCCCCCCCEEEEEECCCEEECCCCHHHCCCHHHHHHHHCCCCCCCEEEECCCC
EAMDPKMAEVMDKAIEKIQEIQKNARENHDETMPYWPVIVFRSPKGWTGPKTWDNKVIEG
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEC
TFRAHQIPIPVDQKNLEHVDALIDWMKSYKPEELFDENGRVLPEIAEIAPKGEKRMASNP
CHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHCCCCCHHHHCCC
ITNGGVNPTDLNLPDYRDYAVDTTKRGQNIKQDMLVWSDYLRDVITKNPTNFRMFGPDET
CCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHH
MSNRLYGLFEVTNRQFVAPIKKDWDEALAPEGRILDAQLSEHSAEGWLETYTLTGRHGIF
HHCCEEEEEEECCCEEECHHHHHHHHHHCCCCCEEECHHHHCCCCCCEEEEEECCCCCCH
TSYEAFLRVVDSMITQHFKWLRKADELDWRNDYPSLNLVSTSTSFQQDHNGYTHQDPGLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCHHH
THLAEKKPEFIREYLPADANSLLAISPLVMNDRNKINLIIASKQPRPQFYSMEEAEVLAK
HHHHHCCHHHHHHHCCCCCCCEEEECCEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHH
NGLGIIDWASTTNGEEPDVVFAAAGTEPNMESLAAINILHDNFPDLKIRFINVVDLLKLQ
CCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHEEEHHHCCCCCCEEEEEHHHHHHHHC
SPKVNPNGLSDEEFDRYFTKDKPVIFTFHGFEDLIRSIFFDRHNHNLHVHGYREEGDITT
CCCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
PFDMRVLNELDRFHLAQDTINSIPEFAEKGADFSQQMDNTLERHYQYIRDNGDDLPEVTN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
WTWKDVN
CEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-xylulose 5-phosphate; phosphate

Specific reaction: D-xylulose 5-phosphate + phosphate = acetyl phosphate + D-glyceraldehyde 3-phosphate + H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA