| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492063
Identifier: 116492063
GI number: 116492063
Start: 308237
End: 309193
Strand: Direct
Name: 116492063
Synonym: PEPE_0259
Alternate gene names: NA
Gene position: 308237-309193 (Clockwise)
Preceding gene: 116492062
Following gene: 116492067
Centisome position: 16.82
GC content: 37.1
Gene sequence:
>957_bases ATGAGCAAAGTTGAAGTAAATGATACAGTAAAATCGCTTCTTGAAGAAGTTAATGCAAGTTTTCCAGGAGAAGTACGGAT TGGTTTTGGTGAAGAACAGGCCGGTTTTGTGCGTCACGACCAAGCCCAGCAATTTGTTGAAGAAGGTAAGATGTTAATCA AGGTCAATGATATTACGGCACCTAATTACACTGCTTCCCATGAGTTAATTCACATGTTAATGATTTTGAAAGGTTTTCCA CAACTTTATTTCCAATTATCAACAGGGGAAAAAGATACGGATAATCAATTGATGTTTTTGATTACTGAGCTTTACGATGT AATCGCCCACGAAGTTGTCGTCAAAGAACAACGTCGGCATTATTTAATCGATGATGAGGTGGAAGAAGCTTTCTTTAAAG GGATTGAAGATGCCGTAGAGGCTGAGGATGCTGGTAAAGTTGACGGATTTAGTACTATTCGTCTAATAATGATGATGGAT GCCATTACGTTCTATGGAAATGGTTTAGCGAACTTTGAAACGCGGTTGATGGATGCTTTTCCAACAACCTACCAAGCTGC TAAAAAAATTATGCAAGAACTTGACCAACGGACCATCAGTAATCCGTTTGATTTCCGTCGAAAAGTAGTCAAAGCTTTCG AATTAATTGATACTCAATTAAAAGAATGGGATTTACCAGAAATTCATGCGATGGAATTTGCGACATTGGGAAGTGTATTT AGTGAACGTCAACTTCGTTTATCAGTTAAACAATTATTCCAAATCTTCCATTCAGATTTACATGAAAAAGCTCAAGATAC ACGTGGATTTGTTGGTTTAGGAATTAGCGACCAACAAAACGCCTTTGTGGTACCAACACCTAAAGATATGCCAAGTGACG AATACTTCCGTGAATTATATGCAAAGAATGTTAAAGACTTCTTTGAAGAAATGAAGATGCCTTATACTATTAGATAA
Upstream 100 bases:
>100_bases GCAGAGCTAGGAGATGCGGTTAACCGATTAGTCCAAGCTGAAAGAATTGATGCCAAAAATGCCCAACAAATTATTAAACA GCTAAGAAAGAAGGATAATG
Downstream 100 bases:
>100_bases AATAAAAATCCTGGACTAAAGTAATTTTAGTTACAGGATTTTTTGTTAGTTATGAAATTGCGATTAATCTTTCTAAACTA GACAGGTTTTCATGAAAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MSKVEVNDTVKSLLEEVNASFPGEVRIGFGEEQAGFVRHDQAQQFVEEGKMLIKVNDITAPNYTASHELIHMLMILKGFP QLYFQLSTGEKDTDNQLMFLITELYDVIAHEVVVKEQRRHYLIDDEVEEAFFKGIEDAVEAEDAGKVDGFSTIRLIMMMD AITFYGNGLANFETRLMDAFPTTYQAAKKIMQELDQRTISNPFDFRRKVVKAFELIDTQLKEWDLPEIHAMEFATLGSVF SERQLRLSVKQLFQIFHSDLHEKAQDTRGFVGLGISDQQNAFVVPTPKDMPSDEYFRELYAKNVKDFFEEMKMPYTIR
Sequences:
>Translated_318_residues MSKVEVNDTVKSLLEEVNASFPGEVRIGFGEEQAGFVRHDQAQQFVEEGKMLIKVNDITAPNYTASHELIHMLMILKGFP QLYFQLSTGEKDTDNQLMFLITELYDVIAHEVVVKEQRRHYLIDDEVEEAFFKGIEDAVEAEDAGKVDGFSTIRLIMMMD AITFYGNGLANFETRLMDAFPTTYQAAKKIMQELDQRTISNPFDFRRKVVKAFELIDTQLKEWDLPEIHAMEFATLGSVF SERQLRLSVKQLFQIFHSDLHEKAQDTRGFVGLGISDQQNAFVVPTPKDMPSDEYFRELYAKNVKDFFEEMKMPYTIR >Mature_317_residues SKVEVNDTVKSLLEEVNASFPGEVRIGFGEEQAGFVRHDQAQQFVEEGKMLIKVNDITAPNYTASHELIHMLMILKGFPQ LYFQLSTGEKDTDNQLMFLITELYDVIAHEVVVKEQRRHYLIDDEVEEAFFKGIEDAVEAEDAGKVDGFSTIRLIMMMDA ITFYGNGLANFETRLMDAFPTTYQAAKKIMQELDQRTISNPFDFRRKVVKAFELIDTQLKEWDLPEIHAMEFATLGSVFS ERQLRLSVKQLFQIFHSDLHEKAQDTRGFVGLGISDQQNAFVVPTPKDMPSDEYFRELYAKNVKDFFEEMKMPYTIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36733; Mature: 36602
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVEVNDTVKSLLEEVNASFPGEVRIGFGEEQAGFVRHDQAQQFVEEGKMLIKVNDITA CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC PNYTASHELIHMLMILKGFPQLYFQLSTGEKDTDNQLMFLITELYDVIAHEVVVKEQRRH CCCCHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC YLIDDEVEEAFFKGIEDAVEAEDAGKVDGFSTIRLIMMMDAITFYGNGLANFETRLMDAF CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC PTTYQAAKKIMQELDQRTISNPFDFRRKVVKAFELIDTQLKEWDLPEIHAMEFATLGSVF CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SERQLRLSVKQLFQIFHSDLHEKAQDTRGFVGLGISDQQNAFVVPTPKDMPSDEYFRELY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHH AKNVKDFFEEMKMPYTIR HHHHHHHHHHCCCCCCCC >Mature Secondary Structure SKVEVNDTVKSLLEEVNASFPGEVRIGFGEEQAGFVRHDQAQQFVEEGKMLIKVNDITA CCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCC PNYTASHELIHMLMILKGFPQLYFQLSTGEKDTDNQLMFLITELYDVIAHEVVVKEQRRH CCCCHHHHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC YLIDDEVEEAFFKGIEDAVEAEDAGKVDGFSTIRLIMMMDAITFYGNGLANFETRLMDAF CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC PTTYQAAKKIMQELDQRTISNPFDFRRKVVKAFELIDTQLKEWDLPEIHAMEFATLGSVF CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SERQLRLSVKQLFQIFHSDLHEKAQDTRGFVGLGISDQQNAFVVPTPKDMPSDEYFRELY HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHH AKNVKDFFEEMKMPYTIR HHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA